Harmonizing plant metabarcoding pipelines in Europe to support monitoring activities in the field of plants
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Plant metabarcoding, including analyzing environmental DNA, is currently not standardized, preventing high-throughput large-scale analyses. METAPLANTCODE harmonizes best practices for metabarcoding of plants collected across Europe to accelerate species monitoring and integrate biodiversity data. Existing pipelines for species identification are standardized and linked to reference databases. Best practices on FAIR data publishing will be incorporated in the GBIF and INSDC websites. ELIXIR-compatible DL-models will be implemented in novel tools. Species identification will be standardized through links with (inter)national checklists, red lists, floras, and Catalogue of Life. Literature will be semantically enriched with new entity recognition modules.
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