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University of Delaware Library Institutional Repository

Institutional Repository United States Compatibility:Not yet registeredPartners:UD

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OpenRiver: A Digital Repository of Southeast Minnesota

Institutional Repository United States Compatibility:Not yet registeredPartners:WSU

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Biomedical Entity Expansion, Ranking, and Explorations
Data Repository United States Compatibility:Not yet registeredPartners:UAB Life Science, Biomedical Science, Gene functional annotation
UAB
doi: 10.25504/fairsharing.f3dla1
doi: 10.25504/fairsharing.f3dla1
BEERE (Biomedical Entity Expansion, Ranking, and Explorations) is a web-based data analysis tool to help biomedical researchers characterize any input list of genes/proteins, biomedical terms, or their combinations, i.e., “biomedical entities”, in the context of existing literature. Specifically, BEERE first aims to help users examine the credibility of known entity-to-entity associative or semantic relationships supported by database or literature references from the user input of a gene/term list. Then, it will help users uncover the relative importance of each entity—a gene or a term—within the user input by computing the ranking scores of all entities. Lastly, it will help users hypothesize new gene functions or genotype-phenotype associations by an interactive visual interface of constructed global entity relationship network. The output from BEERE includes: a list of the original entities matched with known relationships in databases; any expanded entities that may be generated from the analysis; the ranks and ranking scores reported with statistical significance for each entity; and an interactive graphical display of the gene or term’s network within data provenance annotations that link out to external data sources. The web server is free and open to all users with no login requirement and can be accessed at http://discovery.informatics.uab.edu/beere/.
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Breast Cancer Surveillance Consortium
Data Repository United States, Pakistan Compatibility:Not yet registeredPartners:HHSD, NIH, NHLBI, The USA.gov Life Sciences, Medicine, Gynaecology and Obstetrics
HHSD,
NIH,
NHLBI,
The USA.gov
re3data: r3d100011260
re3data: r3d100011260
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Data.CDC.gov
Data Repository United States Compatibility:Not yet registeredPartners:CDC Public Health
CDC
doi: 10.25504/fairsharing.szgagy
doi: 10.25504/fairsharing.szgagy
Data.CDC.gov hosts data sets published by the Centers for Disease Control and Prevention on public health topics.
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XULA Digital Commons

Institutional Repository United States Compatibility:Not yet registeredPartners:XULA

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Erythropoiesis Database
Data Repository United States Compatibility:Not yet registeredPartners:University of Pennsylvania Life Science, Expression data, deoxyribonucleic acid
University of Pennsylvania
doi: 10.25504/fairsharing.krvr4
doi: 10.25504/fairsharing.krvr4
EpoDB (Erythropoiesis database) is a database of genes that relate to vertebrate red blood cells. It includes DNA sequence, structural features, protein information, gene expression information and transcription factor binding sites.
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INSIDE Idaho

Thematic Repository United States Compatibility:Not yet registeredPartners:UI

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Endocrine Pancreas Consortium Database
Data Repository United States Compatibility:Not yet registeredPartners:CBIL Life Science, biological regulation, gene
CBIL
doi: 10.25504/fairsharing.c34wtj
doi: 10.25504/fairsharing.c34wtj
EPConDB is a resource of the Beta Cell Biology Consortium which displays information about genes expressed in cells of the pancreas and their transcriptional regulation.
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United Nations Population Divison Data
Data Repository United States Compatibility:Not yet registeredPartners:UN, United Nations, Department of Economic and Social Affairs, Population Division Humanities and Social Sciences, Life Sciences, Natural Sciences
UN,
United Nations, Department of Economic and Social Affairs, Population Division
re3data: r3d100014453
re3data: r3d100014453
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4,299 Data sources

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University of Delaware Library Institutional Repository

Institutional Repository United States Compatibility:Not yet registeredPartners:UD

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OpenRiver: A Digital Repository of Southeast Minnesota

Institutional Repository United States Compatibility:Not yet registeredPartners:WSU

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Biomedical Entity Expansion, Ranking, and Explorations
Data Repository United States Compatibility:Not yet registeredPartners:UAB Life Science, Biomedical Science, Gene functional annotation
UAB
doi: 10.25504/fairsharing.f3dla1
doi: 10.25504/fairsharing.f3dla1
BEERE (Biomedical Entity Expansion, Ranking, and Explorations) is a web-based data analysis tool to help biomedical researchers characterize any input list of genes/proteins, biomedical terms, or their combinations, i.e., “biomedical entities”, in the context of existing literature. Specifically, BEERE first aims to help users examine the credibility of known entity-to-entity associative or semantic relationships supported by database or literature references from the user input of a gene/term list. Then, it will help users uncover the relative importance of each entity—a gene or a term—within the user input by computing the ranking scores of all entities. Lastly, it will help users hypothesize new gene functions or genotype-phenotype associations by an interactive visual interface of constructed global entity relationship network. The output from BEERE includes: a list of the original entities matched with known relationships in databases; any expanded entities that may be generated from the analysis; the ranks and ranking scores reported with statistical significance for each entity; and an interactive graphical display of the gene or term’s network within data provenance annotations that link out to external data sources. The web server is free and open to all users with no login requirement and can be accessed at http://discovery.informatics.uab.edu/beere/.
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Breast Cancer Surveillance Consortium
Data Repository United States, Pakistan Compatibility:Not yet registeredPartners:HHSD, NIH, NHLBI, The USA.gov Life Sciences, Medicine, Gynaecology and Obstetrics
HHSD,
NIH,
NHLBI,
The USA.gov
re3data: r3d100011260
re3data: r3d100011260
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Data.CDC.gov
Data Repository United States Compatibility:Not yet registeredPartners:CDC Public Health
CDC
doi: 10.25504/fairsharing.szgagy
doi: 10.25504/fairsharing.szgagy
Data.CDC.gov hosts data sets published by the Centers for Disease Control and Prevention on public health topics.
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XULA Digital Commons

Institutional Repository United States Compatibility:Not yet registeredPartners:XULA

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Erythropoiesis Database
Data Repository United States Compatibility:Not yet registeredPartners:University of Pennsylvania Life Science, Expression data, deoxyribonucleic acid
University of Pennsylvania
doi: 10.25504/fairsharing.krvr4
doi: 10.25504/fairsharing.krvr4
EpoDB (Erythropoiesis database) is a database of genes that relate to vertebrate red blood cells. It includes DNA sequence, structural features, protein information, gene expression information and transcription factor binding sites.
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INSIDE Idaho

Thematic Repository United States Compatibility:Not yet registeredPartners:UI

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Endocrine Pancreas Consortium Database
Data Repository United States Compatibility:Not yet registeredPartners:CBIL Life Science, biological regulation, gene
CBIL
doi: 10.25504/fairsharing.c34wtj
doi: 10.25504/fairsharing.c34wtj
EPConDB is a resource of the Beta Cell Biology Consortium which displays information about genes expressed in cells of the pancreas and their transcriptional regulation.
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United Nations Population Divison Data
Data Repository United States Compatibility:Not yet registeredPartners:UN, United Nations, Department of Economic and Social Affairs, Population Division Humanities and Social Sciences, Life Sciences, Natural Sciences
UN,
United Nations, Department of Economic and Social Affairs, Population Division
re3data: r3d100014453
re3data: r3d100014453
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University of Delaware Library Institutional Repository

OpenRiver: A Digital Repository of Southeast Minnesota

Biomedical Entity Expansion, Ranking, and Explorations

Breast Cancer Surveillance Consortium

Data.CDC.gov

XULA Digital Commons

Erythropoiesis Database

INSIDE Idaho

Endocrine Pancreas Consortium Database

United Nations Population Divison Data

University of Delaware Library Institutional Repository

OpenRiver: A Digital Repository of Southeast Minnesota

Biomedical Entity Expansion, Ranking, and Explorations

Breast Cancer Surveillance Consortium

Data.CDC.gov

XULA Digital Commons

Erythropoiesis Database

INSIDE Idaho

Endocrine Pancreas Consortium Database

United Nations Population Divison Data

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