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- Data Repository United States Compatibility:Not yet registeredPartners:UT System Genetics, Bioinformatics, GenomicsUT System
EcoliWiki is a community-based resource for the annotation of all non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. Users can contribute data to this wiki-style repository.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository United States Compatibility:Not yet registeredPartners:New College of FloridaNew College of FloridaAll Research products
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For further information contact us at helpdesk@openaire.eu - Data Repository Netherlands Compatibility:Not yet registeredPartners:KB Humanities and Social Sciences, History, LinguisticsKB
re3data: r3d100013609
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:VertNet Life Science, Biodiversity, Taxonomic classificationVertNet
VertNet uses the Integrated Publishing Toolkit (IPT) to host published biodiversity data on the VertNet IPT for its participating institutions. The IPT is a free, open source web application designed to publish primary occurrence data, species checklists and taxonomies, and associated dataset metadata available for use on the Internet. Data are published as web-based Darwin Core Archives (simple ZIP files that contain tab-delimited or comma-separated text files organized using the Darwin Core Standard).
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Sweden Compatibility:Not yet registeredPartners:Halmstad UniversityHalmstad UniversityAll Research products
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Dana-Farber Cancer Institute Life Science, Anatomy, Biomedical ScienceDana-Farber Cancer Institute
Comparison system for cancer stem cell analysis
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:collected from a compatible aggregatorPartners:NSF, ICS, IEE Atmospheric Science and Oceanography, Zoology, BiologyNSF,ICS,IEEAll Research products
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:TSRI Biomedical Science, Drug report, drugTSRI
Drug Mechanism Database (DrugMechDB) compiles curated mechanism of action linking a drug to a disease. Most drug mechanisms are described simply as a protein target, or a pathway, that then treats the disease. However, there are usually more steps across a biological knowledge graph required to traverse from the target through its mechanism to the reduction of a disease. DrugMechDB catalog a subset of known drug-disease indications as a path through a network of biomedical entities.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Eukaryotic Pathogen, Vector & Host Informatics Resource (VEuPathDB) Bioinformatics Resource Center (BRC) Functional Genomics, Comparative Genomics, Structural GenomicsEukaryotic Pathogen, Vector & Host Informatics Resource (VEuPathDB) Bioinformatics Resource Center (BRC)
re3data: r3d100012460
PiroplasmaDB is one of the databases that can be accessed through the VEuPathDB portal. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the VEuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Kids First Clinical Studies, regionKids First
The Common Fund’s Gabriella Miller Kids First Pediatric Research Program (Kids First) has developed the Kids First Data Resource, a large-scale data resource to help researchers uncover new insights into the biology of childhood cancer and structural birth defects. It provides clinically annotated genomic data and is integrated with several tools to accelerate pediatric disease research. The Kids First Data Resource Portal allows users to query, or search, Kids First datasets, build virtual cohorts, or collections, of individual participants, and identify datasets for analysis. CAVATICA, built by Seven Bridges Genomics, allows users to run bioinformatics workflows in a cloud-based environment.
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- Data Repository United States Compatibility:Not yet registeredPartners:UT System Genetics, Bioinformatics, GenomicsUT System
EcoliWiki is a community-based resource for the annotation of all non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. Users can contribute data to this wiki-style repository.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository United States Compatibility:Not yet registeredPartners:New College of FloridaNew College of FloridaAll Research products
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For further information contact us at helpdesk@openaire.eu - Data Repository Netherlands Compatibility:Not yet registeredPartners:KB Humanities and Social Sciences, History, LinguisticsKB
re3data: r3d100013609
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:VertNet Life Science, Biodiversity, Taxonomic classificationVertNet
VertNet uses the Integrated Publishing Toolkit (IPT) to host published biodiversity data on the VertNet IPT for its participating institutions. The IPT is a free, open source web application designed to publish primary occurrence data, species checklists and taxonomies, and associated dataset metadata available for use on the Internet. Data are published as web-based Darwin Core Archives (simple ZIP files that contain tab-delimited or comma-separated text files organized using the Darwin Core Standard).
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Dana-Farber Cancer Institute Life Science, Anatomy, Biomedical ScienceDana-Farber Cancer Institute
Comparison system for cancer stem cell analysis
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:TSRI Biomedical Science, Drug report, drugTSRI
Drug Mechanism Database (DrugMechDB) compiles curated mechanism of action linking a drug to a disease. Most drug mechanisms are described simply as a protein target, or a pathway, that then treats the disease. However, there are usually more steps across a biological knowledge graph required to traverse from the target through its mechanism to the reduction of a disease. DrugMechDB catalog a subset of known drug-disease indications as a path through a network of biomedical entities.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Eukaryotic Pathogen, Vector & Host Informatics Resource (VEuPathDB) Bioinformatics Resource Center (BRC) Functional Genomics, Comparative Genomics, Structural GenomicsEukaryotic Pathogen, Vector & Host Informatics Resource (VEuPathDB) Bioinformatics Resource Center (BRC)
re3data: r3d100012460
PiroplasmaDB is one of the databases that can be accessed through the VEuPathDB portal. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the VEuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Kids First Clinical Studies, regionKids First
The Common Fund’s Gabriella Miller Kids First Pediatric Research Program (Kids First) has developed the Kids First Data Resource, a large-scale data resource to help researchers uncover new insights into the biology of childhood cancer and structural birth defects. It provides clinically annotated genomic data and is integrated with several tools to accelerate pediatric disease research. The Kids First Data Resource Portal allows users to query, or search, Kids First datasets, build virtual cohorts, or collections, of individual participants, and identify datasets for analysis. CAVATICA, built by Seven Bridges Genomics, allows users to run bioinformatics workflows in a cloud-based environment.
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