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- Data Repository Singapore Compatibility:Not yet registeredPartners:Bioinformatics and Drug Design Group, Department of Pharmacy, National University of Singapore, Singapore Biomedical Science, disease, pathwayBioinformatics and Drug Design Group, Department of Pharmacy, National University of Singapore, Singapore
The Therapeutically Relevant Multiple Pathways Database is designed to provide information about such multiple pathways and related therapeutic targets described in the literatures, the targeted disease conditions, and the corresponding drugs/ligands directed at each of these targets. This resource has been marked as Uncertain because its project home can no longer be found either with a general search or on the founding group's website at http://bidd.group/group/about.htm. Please get in touch if you have any information about this resource.
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GigaDB is a data repository supporting scientific publications in the Life/Biomedical Sciences domain. GigaDB organises and curates data from individually publishable units into datasets, which are provided openly and in as FAIR manner as possible for the global research community. Originally GigaDB primarily served as a repository to host data and tools associated with articles in GigaScience Press. GigaDB defines a dataset as a group of files (e.g., sequencing data, analyses, imaging files, software programs) that are related to and support an article or study. Through our association with DataCite, each dataset in GigaDB will be assigned a DOI that can be used as a standard citation for future use of these data in other articles by the authors and other researchers. Datasets in GigaDB all require a title that is specific to the dataset, an author list, and an abstract that provides information specific to the data included within the set. We encourage detailed information about the data we host to be submitted by their creators in ISA-Tab, a format used by the BioSharing and ISA Commons communities that we work with to maintain the highest data and metadata standards in our journal. To maximize its utility to the research community, all datasets in GigaDB are placed under a CC0 waiver.
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re3data: r3d100012440
OAI-PMH URL: https://researchdata.ntu.edu.sg/oaiDR-NTU (Data) is an institutional research data repository of Nanyang Technological University (NTU), Singapore. The repository has a mission to curate, store, preserve, make available and enable the download of digital data generated by the NTU research community in various disciplines. The repository develops and provides guidance for managing, sharing, and reusing research data to promote responsible data sharing in support of open science and research integrity.
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The HGTree database provides putative genome-wide horizontal gene transfer (HGT) information for 2,472 completely sequenced prokaryotic genomes. HGT detection is based on an explicit evolutionary model of tree reconstruction and relies on evaluating the conflicts between phylogenetic tree of each orthologous gene set and corresponding 16S rRNA species tree. The database provides quick and easy access to HGT-related genes in hundreds of prokaryotic genomes and provides functionalities to detect HGT in user-customized datasets and gene and genome sequences. The database is freely available and can be easily scaled and updated to keep pace with the rapid rise in genomic information.
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- Data Repository Singapore Compatibility:Not yet registeredPartners:Bioinformatics and Drug Design Group, Department of Pharmacy, National University of Singapore, Singapore Biomedical Science, disease, pathwayBioinformatics and Drug Design Group, Department of Pharmacy, National University of Singapore, Singapore
The Therapeutically Relevant Multiple Pathways Database is designed to provide information about such multiple pathways and related therapeutic targets described in the literatures, the targeted disease conditions, and the corresponding drugs/ligands directed at each of these targets. This resource has been marked as Uncertain because its project home can no longer be found either with a general search or on the founding group's website at http://bidd.group/group/about.htm. Please get in touch if you have any information about this resource.
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re3data: r3d100010881
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GigaDB is a data repository supporting scientific publications in the Life/Biomedical Sciences domain. GigaDB organises and curates data from individually publishable units into datasets, which are provided openly and in as FAIR manner as possible for the global research community. Originally GigaDB primarily served as a repository to host data and tools associated with articles in GigaScience Press. GigaDB defines a dataset as a group of files (e.g., sequencing data, analyses, imaging files, software programs) that are related to and support an article or study. Through our association with DataCite, each dataset in GigaDB will be assigned a DOI that can be used as a standard citation for future use of these data in other articles by the authors and other researchers. Datasets in GigaDB all require a title that is specific to the dataset, an author list, and an abstract that provides information specific to the data included within the set. We encourage detailed information about the data we host to be submitted by their creators in ISA-Tab, a format used by the BioSharing and ISA Commons communities that we work with to maintain the highest data and metadata standards in our journal. To maximize its utility to the research community, all datasets in GigaDB are placed under a CC0 waiver.
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OAI-PMH URL: https://researchdata.ntu.edu.sg/oaiDR-NTU (Data) is an institutional research data repository of Nanyang Technological University (NTU), Singapore. The repository has a mission to curate, store, preserve, make available and enable the download of digital data generated by the NTU research community in various disciplines. The repository develops and provides guidance for managing, sharing, and reusing research data to promote responsible data sharing in support of open science and research integrity.
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The HGTree database provides putative genome-wide horizontal gene transfer (HGT) information for 2,472 completely sequenced prokaryotic genomes. HGT detection is based on an explicit evolutionary model of tree reconstruction and relies on evaluating the conflicts between phylogenetic tree of each orthologous gene set and corresponding 16S rRNA species tree. The database provides quick and easy access to HGT-related genes in hundreds of prokaryotic genomes and provides functionalities to detect HGT in user-customized datasets and gene and genome sequences. The database is freely available and can be easily scaled and updated to keep pace with the rapid rise in genomic information.
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