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3,397 Data sources

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  • nmrshiftdb2 is an NMR database for organic structures and their nuclear magnetic resonance (NMR) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties. It also features peer-reviewed submission of datasets by its users. The nmrshiftdb2 software is open source, the data is published under an open content license.

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  • The repository is used for the publication, the proof and the long-term archiving of electronic documents. The interface is available in German and English.

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  • The ICI Berlin Repository is a multi-disciplinary open access archive for the dissemination of scientific research documents related to the ICI Berlin, whether they are originally published by the ICI Berlin or elsewhere.

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  • PsychArchives is a disciplinary repository for psychological science and neighboring disciplines. Accommodating 20 different digital research object (DRO) types, including articles, preprints, research data, code, supplements, preregistrations, tests and multimedia objects, PsychArchives provides a digital space that integrates all research-related content relevant to psychology. PsychArchives is committed to the FAIR principles, facilitating the findability, accessibility, interoperability and reusability of research and research data.

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  • This site provides access to the student output of the institution. The interface is available in German and English.

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  • The BonaRes Repository stores soil and agricultural research data from research projects and long-term field experiments which contribute significantly to the analysis of changes of soil and soil functions over the long term. Research data are described by the metadata following the BonaRes Metadata Schema (DOI: 10.20387/bonares-5pgg-8yrp) which combines international recognized standards for the description of geospatial data and research data. Metadata includes AGROVOC keywords.

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  • The Eukaryotic Promoter Database (EPD) provides accurate transcription start site (TSS) information for promoters of 15 model organisms, from human to yeast to the malaria parasite Plasmodium falciparum. While the original database was a manually curated database based on published experiments, new promoter collections are now produced entirely automatically (under the name “EPDnew”) based on high-throughput transcript mapping data and high-quality gene annotation resources. Corresponding functional genomics data can be viewed in a genome browser, queried or analyzed via web interfaces, or exported in standard formats like FASTA or BED for subsequent analysis with other tools; of note, EPD is tightly integrated with two tool suites developed by our group: ChIP-Seq and Signal Search Analysis, for analysis of chromatin context and sequence motif respectively. EPD provides promoter viewers, designed with the aim of integrating and displaying information from different sources about, for instance, histone marks, transcription factor-binding sites or SNPs with known phenotypes. These viewers rely upon the UCSC genome browser as a visualization platform, which enables users to view data tracks from EPD jointly with tracks from UCSC or public track hubs.

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3,397 Data sources
  • nmrshiftdb2 is an NMR database for organic structures and their nuclear magnetic resonance (NMR) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties. It also features peer-reviewed submission of datasets by its users. The nmrshiftdb2 software is open source, the data is published under an open content license.

    more_vert
  • The repository is used for the publication, the proof and the long-term archiving of electronic documents. The interface is available in German and English.

    more_vert
  • more_vert
  • more_vert
  • The ICI Berlin Repository is a multi-disciplinary open access archive for the dissemination of scientific research documents related to the ICI Berlin, whether they are originally published by the ICI Berlin or elsewhere.

    more_vert
  • PsychArchives is a disciplinary repository for psychological science and neighboring disciplines. Accommodating 20 different digital research object (DRO) types, including articles, preprints, research data, code, supplements, preregistrations, tests and multimedia objects, PsychArchives provides a digital space that integrates all research-related content relevant to psychology. PsychArchives is committed to the FAIR principles, facilitating the findability, accessibility, interoperability and reusability of research and research data.

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  • This site provides access to the student output of the institution. The interface is available in German and English.

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  • The BonaRes Repository stores soil and agricultural research data from research projects and long-term field experiments which contribute significantly to the analysis of changes of soil and soil functions over the long term. Research data are described by the metadata following the BonaRes Metadata Schema (DOI: 10.20387/bonares-5pgg-8yrp) which combines international recognized standards for the description of geospatial data and research data. Metadata includes AGROVOC keywords.

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  • The Eukaryotic Promoter Database (EPD) provides accurate transcription start site (TSS) information for promoters of 15 model organisms, from human to yeast to the malaria parasite Plasmodium falciparum. While the original database was a manually curated database based on published experiments, new promoter collections are now produced entirely automatically (under the name “EPDnew”) based on high-throughput transcript mapping data and high-quality gene annotation resources. Corresponding functional genomics data can be viewed in a genome browser, queried or analyzed via web interfaces, or exported in standard formats like FASTA or BED for subsequent analysis with other tools; of note, EPD is tightly integrated with two tool suites developed by our group: ChIP-Seq and Signal Search Analysis, for analysis of chromatin context and sequence motif respectively. EPD provides promoter viewers, designed with the aim of integrating and displaying information from different sources about, for instance, histone marks, transcription factor-binding sites or SNPs with known phenotypes. These viewers rely upon the UCSC genome browser as a visualization platform, which enables users to view data tracks from EPD jointly with tracks from UCSC or public track hubs.

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