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- Data Repository United States, Canada, Netherlands Compatibility:Not yet registeredPartners:Computational Biology Center, Memorial Sloan-Kettering Cancer Center, cBio Center at the Dana-Farber Cancer Institute and at Harvard Medical School, Boston, USA, Princess Margaret Cancer Centre, The Hyve, CHOP Preclinical Studies, Biomedical Science, ProteomicsComputational Biology Center, Memorial Sloan-Kettering Cancer Center,cBio Center at the Dana-Farber Cancer Institute and at Harvard Medical School, Boston, USA,Princess Margaret Cancer Centre,The Hyve,CHOP
The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Netherlands Compatibility:OpenAIRE PubRepos v4.0Partners:Leiden University MultidisciplinaryLeiden University
This is an institutional repository providing access to the publications and dissertations of scientists affiliated to Leiden University. Where possible the publications have been made freely accessible. Recent full-text materials may be restricted by temporary embargoes.
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re3data: r3d100011905
The Leiden Open Variation Database (LOVD) provides a flexible, freely available tool for gene-centered collection and display of DNA variations. LOVD also stores patient-centered data, NGS data, and variants outside of genes.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States, Pakistan Compatibility:Not yet registeredPartners:NLM, NIH, NCBI Clinical Studies, Genetics, geneNLM,NIH,NCBI
GTR is a freely accessible database of orderable clinical and research genetic test descriptions and the laboratories that provide them. Scope includes molecular, biochemical and cytogenetic human genetic tests as well as serologic and molecular microbe tests. Test descriptions include the test targets and the conditions the tests are for, methodology, clinical and analytical validity, clinical utility and ordering information. The goals of GTR are to bring transparency to the testing field, support clinicians ordering tests and advance the public health and research into the genetic basis of health and disease.
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re3data: r3d100011718
EIDA, an initiative within ORFEUS, is a distributed federation of datacenters established to (a) securely archive seismic waveform data and metadata gathered by European research infrastructures, and (b) to provide transparent access to the archives by the geosciences research communities.
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Paired Omics Data Platform (PoDP) was created to streamline access to paired omics data so humans and computers can access and read paired datasets as well as record and exploit validated links between BGCs and metabolites. The aim of the PoDP is to connect public metabolomics datasets to their genomic origins. The PoDP does not store any metabolomics or genomics datasets, but captures metadata defining pairs of omics datasets in existing public databases and platforms already validated and utilized by the genomics and metabolomics communities.
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The AlloMAPS database provides data on the energetics of communication in proteins with well-documented allosteric regulation, allosteric signalling in PDBselect chains, and allosteric effects of mutations. In addition to energetics of allosteric signaling between known functional and regulatory sites, allosteric modulation caused by the binding to these sites, by SNPs, and by mutations designated by the user can be explored. Allosteric Signaling Maps (ASMs), which are produced via the exhaustive computational scanning for stabilizing and destabilizing mutations and for the modulation range caused by the sequence position are available for each protein/protein chain in the database.
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- Data Repository United States, Canada, Netherlands Compatibility:Not yet registeredPartners:Computational Biology Center, Memorial Sloan-Kettering Cancer Center, cBio Center at the Dana-Farber Cancer Institute and at Harvard Medical School, Boston, USA, Princess Margaret Cancer Centre, The Hyve, CHOP Preclinical Studies, Biomedical Science, ProteomicsComputational Biology Center, Memorial Sloan-Kettering Cancer Center,cBio Center at the Dana-Farber Cancer Institute and at Harvard Medical School, Boston, USA,Princess Margaret Cancer Centre,The Hyve,CHOP
The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Netherlands Compatibility:OpenAIRE PubRepos v4.0Partners:Leiden University MultidisciplinaryLeiden University
This is an institutional repository providing access to the publications and dissertations of scientists affiliated to Leiden University. Where possible the publications have been made freely accessible. Recent full-text materials may be restricted by temporary embargoes.
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re3data: r3d100011905
The Leiden Open Variation Database (LOVD) provides a flexible, freely available tool for gene-centered collection and display of DNA variations. LOVD also stores patient-centered data, NGS data, and variants outside of genes.
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GTR is a freely accessible database of orderable clinical and research genetic test descriptions and the laboratories that provide them. Scope includes molecular, biochemical and cytogenetic human genetic tests as well as serologic and molecular microbe tests. Test descriptions include the test targets and the conditions the tests are for, methodology, clinical and analytical validity, clinical utility and ordering information. The goals of GTR are to bring transparency to the testing field, support clinicians ordering tests and advance the public health and research into the genetic basis of health and disease.
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EIDA, an initiative within ORFEUS, is a distributed federation of datacenters established to (a) securely archive seismic waveform data and metadata gathered by European research infrastructures, and (b) to provide transparent access to the archives by the geosciences research communities.
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Paired Omics Data Platform (PoDP) was created to streamline access to paired omics data so humans and computers can access and read paired datasets as well as record and exploit validated links between BGCs and metabolites. The aim of the PoDP is to connect public metabolomics datasets to their genomic origins. The PoDP does not store any metabolomics or genomics datasets, but captures metadata defining pairs of omics datasets in existing public databases and platforms already validated and utilized by the genomics and metabolomics communities.
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The AlloMAPS database provides data on the energetics of communication in proteins with well-documented allosteric regulation, allosteric signalling in PDBselect chains, and allosteric effects of mutations. In addition to energetics of allosteric signaling between known functional and regulatory sites, allosteric modulation caused by the binding to these sites, by SNPs, and by mutations designated by the user can be explored. Allosteric Signaling Maps (ASMs), which are produced via the exhaustive computational scanning for stabilizing and destabilizing mutations and for the modulation range caused by the sequence position are available for each protein/protein chain in the database.
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