1,891 Data sources

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CUBE-DB
Data Repository Singapore Compatibility:Not yet registeredPartners:Evolution of Protein Structure and Function Group, Biomolecular Modelling and Design Division, Bioinformatics Institute, Singapore Life Science, Multiple sequence alignment, molecular_function
Evolution of Protein Structure and Function Group, Biomolecular Modelling and Design Division, Bioinformatics Institute, Singapore
doi: 10.25504/fairsharing.aqb4ne
doi: 10.25504/fairsharing.aqb4ne
Detection of functional divergence in human protein families. Cube-DB is a database of pre-evaluated conservation and specialization scores for residues in paralogous proteins belonging to multi-member families of human proteins. Protein family classification follows (largely) the classification suggested by HUGO Gene Nomenclature Committee. Sets of orthologous protein sequences were generated by mutual-best-hit strategy using full vertebrate genomes available in Ensembl. The scores, described on documentation page, are assigned to each individual residue in a protein, and presented in the form of a table (html or downloadable xls formats) and mapped, when appropriate, onto the related structure (Jmol, Pymol, Chimera).
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Digitaal archief van de Wetenschapswinkels van de Rijksuniversiteit Groningen.

Institutional Repository Netherlands Compatibility:Not yet registeredPartners:University of Groningen

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RIVM repository

Institutional Repository Netherlands Compatibility:Not yet registeredPartners:RIVM

Reports and articles from RIVM

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Publications of the University Nyenrode

Institutional Repository Netherlands Compatibility:collected from a compatible aggregatorPartners:Nyenrode Business University {NULL}

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University of Amsterdam / Amsterdam University of Applied Sciences figshare
Data Repository Netherlands Compatibility:Not yet registeredPartners:UvA, HvA Humanities and Social Sciences, Life Sciences, Natural Sciences
UvA,
HvA
re3data: r3d100012530
re3data: r3d100012530
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BRCA Share
Data Repository United States, Belgium Compatibility:Not yet registeredPartners:Quest Diagnostics (United States), UMD Life Science, Preclinical Studies, Biomedical Science
Quest Diagnostics (United States),
UMD
doi: 10.25504/fairsharing.w8wbyj
doi: 10.25504/fairsharing.w8wbyj
BRCA Share is a novel gene datashare initiative that provides scientists and commercial laboratory organizations around the world with open access to BRCA Share (formerly UMD-BRCA1) contains BRCA1 and BRCA2 genetic data. The program’s goal is to accelerate research on BRCA gene mutations, particularly variants of uncertain significance, to improve the ability of clinical laboratory diagnostics to predict which individuals are at risk of developing these cancers.
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UVH Repository

Institutional Repository Netherlands Compatibility:Not yet registeredPartners:UVH

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Minimum Information about a Tailoring Enzyme data repository
Data Repository Netherlands Compatibility:Not yet registeredPartners:WUR Life Science, Medicinal Chemistry, Biochemistry
WUR
Natural products, also known as specialized or secondary metabolites, are small molecules produced by many organisms. These chemical compounds often show strong biological activities, making them interesting for medicine, agriculture, and other fields. Their biosynthesis is governed by a set of enzymes, which can be separated into gatekeeper/core enzymes, and tailoring enzymes. The latter modify the nascent natural products, giving them their final form, and often confer their biological activity. Tailoring enzymes show a wide range of substrate- and reaction-specificities. The Minimum Information about a Tailoring Enzyme (MITE) data standard was created to facilitate consistent and systematic deposition and retrieval of data on tailoring enzymes. Each MITE entry contains information on a single enzyme: its reaction(s), substrate specificities, known substrate-product pairs, and additional metadata. This record describes the data repository accompanying the data standard.
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TreeBase
Data Repository Netherlands Compatibility:Not yet registeredPartners:Naturalis Biodiversity Center Phylogenomics, Phylogenetics, Taxonomic classification
Naturalis Biodiversity Center
doi: 10.25504/fairsharing.zcn4w4
re3data: r3d100010170
doi: 10.25504/fairsharing.zcn4w4
re3data: r3d100010170
TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic trees and the data used to generate them. TreeBASE accepts all types of phylogenetic data (e.g., trees of species, trees of populations, trees of genes) representing all biotic taxa. TreeBASE is temporarily offline except to provide access to editors/curators, as security updates are required before re-publishing the site.
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Wageningen Staff Publications

Institutional Repository Netherlands Compatibility:collected from a compatible aggregatorPartners:WUR

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1,891 Data sources

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CUBE-DB
Data Repository Singapore Compatibility:Not yet registeredPartners:Evolution of Protein Structure and Function Group, Biomolecular Modelling and Design Division, Bioinformatics Institute, Singapore Life Science, Multiple sequence alignment, molecular_function
Evolution of Protein Structure and Function Group, Biomolecular Modelling and Design Division, Bioinformatics Institute, Singapore
doi: 10.25504/fairsharing.aqb4ne
doi: 10.25504/fairsharing.aqb4ne
Detection of functional divergence in human protein families. Cube-DB is a database of pre-evaluated conservation and specialization scores for residues in paralogous proteins belonging to multi-member families of human proteins. Protein family classification follows (largely) the classification suggested by HUGO Gene Nomenclature Committee. Sets of orthologous protein sequences were generated by mutual-best-hit strategy using full vertebrate genomes available in Ensembl. The scores, described on documentation page, are assigned to each individual residue in a protein, and presented in the form of a table (html or downloadable xls formats) and mapped, when appropriate, onto the related structure (Jmol, Pymol, Chimera).
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Digitaal archief van de Wetenschapswinkels van de Rijksuniversiteit Groningen.

Institutional Repository Netherlands Compatibility:Not yet registeredPartners:University of Groningen

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RIVM repository

Institutional Repository Netherlands Compatibility:Not yet registeredPartners:RIVM

Reports and articles from RIVM

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Publications of the University Nyenrode

Institutional Repository Netherlands Compatibility:collected from a compatible aggregatorPartners:Nyenrode Business University {NULL}

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University of Amsterdam / Amsterdam University of Applied Sciences figshare
Data Repository Netherlands Compatibility:Not yet registeredPartners:UvA, HvA Humanities and Social Sciences, Life Sciences, Natural Sciences
UvA,
HvA
re3data: r3d100012530
re3data: r3d100012530
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BRCA Share
Data Repository United States, Belgium Compatibility:Not yet registeredPartners:Quest Diagnostics (United States), UMD Life Science, Preclinical Studies, Biomedical Science
Quest Diagnostics (United States),
UMD
doi: 10.25504/fairsharing.w8wbyj
doi: 10.25504/fairsharing.w8wbyj
BRCA Share is a novel gene datashare initiative that provides scientists and commercial laboratory organizations around the world with open access to BRCA Share (formerly UMD-BRCA1) contains BRCA1 and BRCA2 genetic data. The program’s goal is to accelerate research on BRCA gene mutations, particularly variants of uncertain significance, to improve the ability of clinical laboratory diagnostics to predict which individuals are at risk of developing these cancers.
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UVH Repository

Institutional Repository Netherlands Compatibility:Not yet registeredPartners:UVH

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Minimum Information about a Tailoring Enzyme data repository
Data Repository Netherlands Compatibility:Not yet registeredPartners:WUR Life Science, Medicinal Chemistry, Biochemistry
WUR
Natural products, also known as specialized or secondary metabolites, are small molecules produced by many organisms. These chemical compounds often show strong biological activities, making them interesting for medicine, agriculture, and other fields. Their biosynthesis is governed by a set of enzymes, which can be separated into gatekeeper/core enzymes, and tailoring enzymes. The latter modify the nascent natural products, giving them their final form, and often confer their biological activity. Tailoring enzymes show a wide range of substrate- and reaction-specificities. The Minimum Information about a Tailoring Enzyme (MITE) data standard was created to facilitate consistent and systematic deposition and retrieval of data on tailoring enzymes. Each MITE entry contains information on a single enzyme: its reaction(s), substrate specificities, known substrate-product pairs, and additional metadata. This record describes the data repository accompanying the data standard.
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TreeBase
Data Repository Netherlands Compatibility:Not yet registeredPartners:Naturalis Biodiversity Center Phylogenomics, Phylogenetics, Taxonomic classification
Naturalis Biodiversity Center
doi: 10.25504/fairsharing.zcn4w4
re3data: r3d100010170
doi: 10.25504/fairsharing.zcn4w4
re3data: r3d100010170
TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic trees and the data used to generate them. TreeBASE accepts all types of phylogenetic data (e.g., trees of species, trees of populations, trees of genes) representing all biotic taxa. TreeBASE is temporarily offline except to provide access to editors/curators, as security updates are required before re-publishing the site.
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Wageningen Staff Publications

Institutional Repository Netherlands Compatibility:collected from a compatible aggregatorPartners:WUR

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NL
SG
BE
Thematic: No

CUBE-DB

Digitaal archief van de Wetenschapswinkels van de Rijksuniversiteit Groningen.

RIVM repository

Publications of the University Nyenrode

University of Amsterdam / Amsterdam University of Applied Sciences figshare

BRCA Share

UVH Repository

Minimum Information about a Tailoring Enzyme data repository

TreeBase

Wageningen Staff Publications

CUBE-DB

Digitaal archief van de Wetenschapswinkels van de Rijksuniversiteit Groningen.

RIVM repository

Publications of the University Nyenrode

University of Amsterdam / Amsterdam University of Applied Sciences figshare

BRCA Share

UVH Repository

Minimum Information about a Tailoring Enzyme data repository

TreeBase

Wageningen Staff Publications

Filters

Country

Thematic

Type

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Jurisdiction

NL close SG close BE closeThematic: No close

NL
SG
BE
Thematic: No