- ES
- NL
- CN
- DZ
- Thematic: No
- ES
- NL
- CN
- DZ
- Thematic: No
- Data Repository Spain Compatibility:Not yet registeredPartners:ULL Humanities and Social Sciences, Life Sciences, Natural SciencesULL
re3data: r3d100013689
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For further information contact us at helpdesk@openaire.eu - Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:WMC Biomedical Science, mutation analysis, mutationWMC
mirDNMR is a database for the collection of gene-centered background DNMRs obtained from different methods and population variation data. The database has the following functions: (i) browse and search the background DNMRs of each gene predicted by four different methods, including GC content (DNMR-GC), sequence context (DNMR-SC), multiple factors (DNMR-MF) and local DNA methylation level (DNMR-DM); (ii) search variant frequencies in publicly available databases, including ExAC, ESP6500, UK10K, 1000G and dbSNP and (iii) investigate the DNM burden to prioritize candidate genes based on the four background DNMRs using three statistical methods (TADA, Binomial and Poisson test). In conclusion, mirDNMR can be widely used to identify the genetic basis of sporadic genetic diseases.
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For further information contact us at helpdesk@openaire.eu - Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:GMU, Sun Yat-sen Memorial Hospital Bioinformatics, Data Integration, data storageGMU,Sun Yat-sen Memorial Hospital
FerrDb V2 contains 1001 ferroptosis regulators and 143 ferroptosis-disease associations manually curated from 3288 articles. Specifically, there are 621 gene regulators, of which 264 are drivers, 238 are suppressors, 9 are markers, and 110 are unclassified genes; and there are 380 substance regulators, with 201 inducers and 179 inhibitors. Compared to FerrDb V1, curated articles increase by > 300%, ferroptosis regulators increase by 175%, and ferroptosis-disease associations increase by 50.5%. Circular RNA and pseudogene are novel regulators in FerrDb V2, and the percentage of non-coding RNA increases from 7.3% to 13.6%. External gene-related data were integrated, enabling thought-provoking and gene-oriented analysis in FerrDb V2.
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For further information contact us at helpdesk@openaire.eu - Data Repository Netherlands, United States Compatibility:Not yet registeredPartners:Netherlands Genomic Initiative, CHLA Phenomics, Biomedical Science, GenomicsNetherlands Genomic Initiative,CHLA
The Mitochondrial Disease Sequence Data Resource (MSeqDR) is a centralized genome and phenome bioinformatics resource built by the mitochondrial disease community to facilitate clinical diagnosis and research investigations of individual patient phenotypes, genomes, genes, and variants. It integrates community knowledge from expert‐curated databases with genomic and phenotype data shared by clinicians and researchers.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:OpenAIRE Basic (DRIVER OA)Partners:European University of Madrid MultidisciplinaryEuropean University of MadridOAI-PMH URL: http://abacus.universidadeuropea.es/oai/request
This repository provides open access to the work of staff and students of Universidad Europea. the interface is in Spanish and English.
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For further information contact us at helpdesk@openaire.eu - Data Repository Netherlands Compatibility:Not yet registeredPartners:RAN Humanities and Social Sciences, Life Sciences, Natural SciencesRAN
re3data: r3d100014120
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For further information contact us at helpdesk@openaire.eu - Institutional Repository China (People's Republic of) Compatibility:Not yet registeredPartners:KMS Of Academy of mathematics and systems sciences, CASKMS Of Academy of mathematics and systems sciences, CASAll Research products
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For further information contact us at helpdesk@openaire.eu - Data Repository Spain Compatibility:Not yet registeredPartners:BSC, UB, Institute for Research in Biomedicine Life Science, Genome annotation, Prediction and recognitionBSC,UB,Institute for Research in Biomedicine
PMut Data Repository collects predictions of the pathological effect of all possible single amino acid variants on Uniref Human protein sequences. Predictions were prepared using PMut 2017 predictor (2017 version).
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:OpenAIRE PubRepos v4.0Partners:UC MultidisciplinaryUCOAI-PMH URL: https://repositorio.unican.es/oai/openaire4
This site provides access to the research output of the institution. The interface is available in Spanish. Users may set up an RSS feed to be alerted to new content.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:OpenAIRE 3.0 (OA, funding)Partners:IMDEA Networks InstituteIMDEA Networks InstituteOAI-PMH URL: https://dspace.networks.imdea.org/oai/request
DSpace at IMDEA Networks is a digital repository for IMDEA Networks' research, including peer-reviewed articles, technical reports, theses, annual reports, and more.
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- Data Repository Spain Compatibility:Not yet registeredPartners:ULL Humanities and Social Sciences, Life Sciences, Natural SciencesULL
re3data: r3d100013689
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For further information contact us at helpdesk@openaire.eu - Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:WMC Biomedical Science, mutation analysis, mutationWMC
mirDNMR is a database for the collection of gene-centered background DNMRs obtained from different methods and population variation data. The database has the following functions: (i) browse and search the background DNMRs of each gene predicted by four different methods, including GC content (DNMR-GC), sequence context (DNMR-SC), multiple factors (DNMR-MF) and local DNA methylation level (DNMR-DM); (ii) search variant frequencies in publicly available databases, including ExAC, ESP6500, UK10K, 1000G and dbSNP and (iii) investigate the DNM burden to prioritize candidate genes based on the four background DNMRs using three statistical methods (TADA, Binomial and Poisson test). In conclusion, mirDNMR can be widely used to identify the genetic basis of sporadic genetic diseases.
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For further information contact us at helpdesk@openaire.eu - Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:GMU, Sun Yat-sen Memorial Hospital Bioinformatics, Data Integration, data storageGMU,Sun Yat-sen Memorial Hospital
FerrDb V2 contains 1001 ferroptosis regulators and 143 ferroptosis-disease associations manually curated from 3288 articles. Specifically, there are 621 gene regulators, of which 264 are drivers, 238 are suppressors, 9 are markers, and 110 are unclassified genes; and there are 380 substance regulators, with 201 inducers and 179 inhibitors. Compared to FerrDb V1, curated articles increase by > 300%, ferroptosis regulators increase by 175%, and ferroptosis-disease associations increase by 50.5%. Circular RNA and pseudogene are novel regulators in FerrDb V2, and the percentage of non-coding RNA increases from 7.3% to 13.6%. External gene-related data were integrated, enabling thought-provoking and gene-oriented analysis in FerrDb V2.
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For further information contact us at helpdesk@openaire.eu - Data Repository Netherlands, United States Compatibility:Not yet registeredPartners:Netherlands Genomic Initiative, CHLA Phenomics, Biomedical Science, GenomicsNetherlands Genomic Initiative,CHLA
The Mitochondrial Disease Sequence Data Resource (MSeqDR) is a centralized genome and phenome bioinformatics resource built by the mitochondrial disease community to facilitate clinical diagnosis and research investigations of individual patient phenotypes, genomes, genes, and variants. It integrates community knowledge from expert‐curated databases with genomic and phenotype data shared by clinicians and researchers.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:OpenAIRE Basic (DRIVER OA)Partners:European University of Madrid MultidisciplinaryEuropean University of MadridOAI-PMH URL: http://abacus.universidadeuropea.es/oai/request
This repository provides open access to the work of staff and students of Universidad Europea. the interface is in Spanish and English.
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For further information contact us at helpdesk@openaire.eu - Data Repository Netherlands Compatibility:Not yet registeredPartners:RAN Humanities and Social Sciences, Life Sciences, Natural SciencesRAN
re3data: r3d100014120
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For further information contact us at helpdesk@openaire.eu - Data Repository Spain Compatibility:Not yet registeredPartners:BSC, UB, Institute for Research in Biomedicine Life Science, Genome annotation, Prediction and recognitionBSC,UB,Institute for Research in Biomedicine
PMut Data Repository collects predictions of the pathological effect of all possible single amino acid variants on Uniref Human protein sequences. Predictions were prepared using PMut 2017 predictor (2017 version).
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:OpenAIRE PubRepos v4.0Partners:UC MultidisciplinaryUCOAI-PMH URL: https://repositorio.unican.es/oai/openaire4
This site provides access to the research output of the institution. The interface is available in Spanish. Users may set up an RSS feed to be alerted to new content.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Spain Compatibility:OpenAIRE 3.0 (OA, funding)Partners:IMDEA Networks InstituteIMDEA Networks InstituteOAI-PMH URL: https://dspace.networks.imdea.org/oai/request
DSpace at IMDEA Networks is a digital repository for IMDEA Networks' research, including peer-reviewed articles, technical reports, theses, annual reports, and more.
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