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University of Macau Scholars Page

Institutional Repository China (People's Republic of) Compatibility:Not yet registeredPartners:澳門大學 (Universidade de Macau)

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mirDNMR
Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:WMC Biomedical Science, mutation analysis, mutation
WMC
doi: 10.25504/fairsharing.68f4xz
doi: 10.25504/fairsharing.68f4xz
mirDNMR is a database for the collection of gene-centered background DNMRs obtained from different methods and population variation data. The database has the following functions: (i) browse and search the background DNMRs of each gene predicted by four different methods, including GC content (DNMR-GC), sequence context (DNMR-SC), multiple factors (DNMR-MF) and local DNA methylation level (DNMR-DM); (ii) search variant frequencies in publicly available databases, including ExAC, ESP6500, UK10K, 1000G and dbSNP and (iii) investigate the DNM burden to prioritize candidate genes based on the four background DNMRs using three statistical methods (TADA, Binomial and Poisson test). In conclusion, mirDNMR can be widely used to identify the genetic basis of sporadic genetic diseases.
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INGV Open Data Registry
Data Repository Italy Compatibility:Not yet registeredPartners:INGV Natural Sciences, Geosciences (including Geography)
INGV
re3data: r3d100013983
re3data: r3d100013983
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MobiDB
Data Repository Italy Compatibility:Not yet registeredPartners:UNIPD Biomedical Science, Biology, Structure
UNIPD
doi: 10.25504/fairsharing.jwra3e
doi: 10.25504/fairsharing.jwra3e
MobiDB is a database of intrinsically disordered regions (IDRs) and related features from various sources and prediction tools. Different levels of reliability and different features are reported as different and independent annotations. The database features three levels of annotation: manually curated, indirect and predicted. MobiDB annotates the binding modes of disordered proteins, whether they undergo disorder-to-order transitions or remain disordered in the bound state. In addition, disordered regions undergoing liquid-liquid phase separation or post-translational modifications are defined.
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Daphnia Water Flea Genome Database
Data Repository Italy Compatibility:Not yet registeredPartners:BioComputing UP, University of Padua, Italy Life Science, Computational Biology, Ecology
BioComputing UP, University of Padua, Italy
doi: 10.25504/fairsharing.h5epxm
doi: 10.25504/fairsharing.h5epxm
wFleaBase includes data from all species of the genus, yet the primary species are Daphnia pulex and Daphnia magna, because of the broad set of genomic tools that have already been developed for these animals.
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CNR-ISMAR Seamap catalog

Institutional Repository Italy Compatibility:Not yet registeredPartners:CNR-ISMAR

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TalkBank
Data Repository United States, Netherlands Compatibility:collected from a compatible aggregatorPartners:NIDCD, NSF, CMU, CLARIN Humanities and Social Sciences, Linguistics, Humanities
NIDCD,
NSF,
CMU,
CLARIN
re3data: r3d100010887
re3data: r3d100010887
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Ontology-based Knowledgebase for Cell Adhesion Molecules
Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:CBI Genomics, cell adhesion, small molecule
CBI
doi: 10.25504/fairsharing.sjk03h
doi: 10.25504/fairsharing.sjk03h
OKCAM (Ontology-based Knowledgebase for Cell Adhesion Molecules) is an online resource for human genes known or predicted to be related to the processes of cell adhesion. These genes include members of the cadherin, immunoglobulin/FibronectinIII (IgFn), integrin, neurexin, neuroligin, and catenin families.
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GEOMIND
Data Repository Slovakia, Lithuania, Czech Republic, Greece, Poland, Italy, Germany, Denmark, Hungary Compatibility:Not yet registeredPartners:SGIDŠ, ITG, MGL, CGS, CGS +7 partners Natural Sciences, Geosciences (including Geography), Geosciences (including Geography)
SGIDŠ,
ITG,
MGL,
CGS,
CGS,
PGI,
GLD,
LIAG,
GEUS,
ITSAK,
ELGI,
GCX
re3data: r3d100010629
re3data: r3d100010629
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Repository of Oran 2 University Mohamed Ben Ahmed

Institutional Repository Algeria Compatibility:Not yet registeredPartners:Université dOran 2 Mohamed Ben Ahmed

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3,347 Data sources

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University of Macau Scholars Page

Institutional Repository China (People's Republic of) Compatibility:Not yet registeredPartners:澳門大學 (Universidade de Macau)

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mirDNMR
Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:WMC Biomedical Science, mutation analysis, mutation
WMC
doi: 10.25504/fairsharing.68f4xz
doi: 10.25504/fairsharing.68f4xz
mirDNMR is a database for the collection of gene-centered background DNMRs obtained from different methods and population variation data. The database has the following functions: (i) browse and search the background DNMRs of each gene predicted by four different methods, including GC content (DNMR-GC), sequence context (DNMR-SC), multiple factors (DNMR-MF) and local DNA methylation level (DNMR-DM); (ii) search variant frequencies in publicly available databases, including ExAC, ESP6500, UK10K, 1000G and dbSNP and (iii) investigate the DNM burden to prioritize candidate genes based on the four background DNMRs using three statistical methods (TADA, Binomial and Poisson test). In conclusion, mirDNMR can be widely used to identify the genetic basis of sporadic genetic diseases.
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INGV Open Data Registry
Data Repository Italy Compatibility:Not yet registeredPartners:INGV Natural Sciences, Geosciences (including Geography)
INGV
re3data: r3d100013983
re3data: r3d100013983
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MobiDB
Data Repository Italy Compatibility:Not yet registeredPartners:UNIPD Biomedical Science, Biology, Structure
UNIPD
doi: 10.25504/fairsharing.jwra3e
doi: 10.25504/fairsharing.jwra3e
MobiDB is a database of intrinsically disordered regions (IDRs) and related features from various sources and prediction tools. Different levels of reliability and different features are reported as different and independent annotations. The database features three levels of annotation: manually curated, indirect and predicted. MobiDB annotates the binding modes of disordered proteins, whether they undergo disorder-to-order transitions or remain disordered in the bound state. In addition, disordered regions undergoing liquid-liquid phase separation or post-translational modifications are defined.
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Daphnia Water Flea Genome Database
Data Repository Italy Compatibility:Not yet registeredPartners:BioComputing UP, University of Padua, Italy Life Science, Computational Biology, Ecology
BioComputing UP, University of Padua, Italy
doi: 10.25504/fairsharing.h5epxm
doi: 10.25504/fairsharing.h5epxm
wFleaBase includes data from all species of the genus, yet the primary species are Daphnia pulex and Daphnia magna, because of the broad set of genomic tools that have already been developed for these animals.
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CNR-ISMAR Seamap catalog

Institutional Repository Italy Compatibility:Not yet registeredPartners:CNR-ISMAR

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TalkBank
Data Repository United States, Netherlands Compatibility:collected from a compatible aggregatorPartners:NIDCD, NSF, CMU, CLARIN Humanities and Social Sciences, Linguistics, Humanities
NIDCD,
NSF,
CMU,
CLARIN
re3data: r3d100010887
re3data: r3d100010887
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Ontology-based Knowledgebase for Cell Adhesion Molecules
Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:CBI Genomics, cell adhesion, small molecule
CBI
doi: 10.25504/fairsharing.sjk03h
doi: 10.25504/fairsharing.sjk03h
OKCAM (Ontology-based Knowledgebase for Cell Adhesion Molecules) is an online resource for human genes known or predicted to be related to the processes of cell adhesion. These genes include members of the cadherin, immunoglobulin/FibronectinIII (IgFn), integrin, neurexin, neuroligin, and catenin families.
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GEOMIND
Data Repository Slovakia, Lithuania, Czech Republic, Greece, Poland, Italy, Germany, Denmark, Hungary Compatibility:Not yet registeredPartners:SGIDŠ, ITG, MGL, CGS, CGS +7 partners Natural Sciences, Geosciences (including Geography), Geosciences (including Geography)
SGIDŠ,
ITG,
MGL,
CGS,
CGS,
PGI,
GLD,
LIAG,
GEUS,
ITSAK,
ELGI,
GCX
re3data: r3d100010629
re3data: r3d100010629
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Repository of Oran 2 University Mohamed Ben Ahmed

Institutional Repository Algeria Compatibility:Not yet registeredPartners:Université dOran 2 Mohamed Ben Ahmed

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NL
CN
IT
DZ

University of Macau Scholars Page

mirDNMR

INGV Open Data Registry

MobiDB

Daphnia Water Flea Genome Database

CNR-ISMAR Seamap catalog

TalkBank

Ontology-based Knowledgebase for Cell Adhesion Molecules

GEOMIND

Repository of Oran 2 University Mohamed Ben Ahmed

University of Macau Scholars Page

mirDNMR

INGV Open Data Registry

MobiDB

Daphnia Water Flea Genome Database

CNR-ISMAR Seamap catalog

TalkBank

Ontology-based Knowledgebase for Cell Adhesion Molecules

GEOMIND

Repository of Oran 2 University Mohamed Ben Ahmed

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