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10,168 Data sources

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  • Thematic: No

  • DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version of DisGeNET (v7.0) contains 1,134,942 gene-disease associations (GDAs), between 21,671 genes and 30,170 diseases, disorders, traits, and clinical or abnormal human phenotypes, and 369,554 variant-disease associations (VDAs), between 194,515 variants and 14,155 diseases, traits, and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, a REST API, and an R package.

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  • (a) Ligand-Receptor Interaction Explorer to explore ligand-receptor interaction database, and (b) Cell- Cell Communication Atlas Explorer to explore the cell-cell communications for any given scRNA-seq dataset processed by the R toolkit CellChat

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  • The Global Visualization Viewer (GloVis) was created to easily view, order, and download remotely sensed data in the public domain. In GloVis, users may narrow down results, view multiple scenes at once, step through time points, view metadata and download the full-band source imagery.

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  • DNAmod is an open-source database (https://dnamod.hoffmanlab.org) that catalogues DNA modifications and provides a single source to learn about their properties. The database annotates the chemical properties and structures of all curated modified DNA bases, and a much larger list of candidate chemical entities. DNAmod includes manual annotations of available sequencing methods, descriptions of their occurrence in nature, and provides existing and suggested nomenclature. DNAmod enables researchers to rapidly review previous work, select mapping techniques, and track recent developments concerning modified bases of interest.

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  • The Database of Genomic Variants archive (DGVa) is a repository that provides archiving, accessioning and distribution of publicly available genomic structural variants, in all species.

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  • This site provides access to the research output of the institution. Users may set up Atom or RSS feeds to be alerted to new content. The interface is available in English.

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  • University repository providing access to the output of the University of Amsterdam.

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  • Record does not exist anymore: Civic Learning, Engagement, and Action Data Sharing. The record with identifier content 10.25504/FAIRsharing.Gzattg was invalid. Please refer to https://doi.org/10.25504/FAIRsharing.aFsZlL instead.Organisations previously linked: [2615, 1393, 3095]. Maintainers previously linked: [3131].

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  • The WHOI Ship DataGrabber system provides the oceanographic community on-line access to underway ship data collected on the R/V Atlantis, Knorr, Oceanus, and Tioga (TBD). All the shipboard data is co-registered with the ship's GPS time and navigation systems. The system is built upon the methodology and technology developed for the Alvin Frame-Grabber and the JasonII Virtual Control Van system. A beta-version was deployed on the R/V Atlantis AT11-16 cruise in the summer of 2004 and the system has subsequently been installed on the R/V Knorr and Oceanus.

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10,168 Data sources
  • DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific literature, and covers the whole landscape of human diseases. The current version of DisGeNET (v7.0) contains 1,134,942 gene-disease associations (GDAs), between 21,671 genes and 30,170 diseases, disorders, traits, and clinical or abnormal human phenotypes, and 369,554 variant-disease associations (VDAs), between 194,515 variants and 14,155 diseases, traits, and phenotypes. The data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype-phenotype relationships. The information is accessible through a web interface, a Cytoscape App, an RDF SPARQL endpoint, a REST API, and an R package.

    more_vert
  • (a) Ligand-Receptor Interaction Explorer to explore ligand-receptor interaction database, and (b) Cell- Cell Communication Atlas Explorer to explore the cell-cell communications for any given scRNA-seq dataset processed by the R toolkit CellChat

    more_vert
  • The Global Visualization Viewer (GloVis) was created to easily view, order, and download remotely sensed data in the public domain. In GloVis, users may narrow down results, view multiple scenes at once, step through time points, view metadata and download the full-band source imagery.

    more_vert
  • DNAmod is an open-source database (https://dnamod.hoffmanlab.org) that catalogues DNA modifications and provides a single source to learn about their properties. The database annotates the chemical properties and structures of all curated modified DNA bases, and a much larger list of candidate chemical entities. DNAmod includes manual annotations of available sequencing methods, descriptions of their occurrence in nature, and provides existing and suggested nomenclature. DNAmod enables researchers to rapidly review previous work, select mapping techniques, and track recent developments concerning modified bases of interest.

    more_vert
  • The Database of Genomic Variants archive (DGVa) is a repository that provides archiving, accessioning and distribution of publicly available genomic structural variants, in all species.

    more_vert
  • This site provides access to the research output of the institution. Users may set up Atom or RSS feeds to be alerted to new content. The interface is available in English.

    more_vert
  • University repository providing access to the output of the University of Amsterdam.

    more_vert
  • Record does not exist anymore: Civic Learning, Engagement, and Action Data Sharing. The record with identifier content 10.25504/FAIRsharing.Gzattg was invalid. Please refer to https://doi.org/10.25504/FAIRsharing.aFsZlL instead.Organisations previously linked: [2615, 1393, 3095]. Maintainers previously linked: [3131].

    more_vert
  • The WHOI Ship DataGrabber system provides the oceanographic community on-line access to underway ship data collected on the R/V Atlantis, Knorr, Oceanus, and Tioga (TBD). All the shipboard data is co-registered with the ship's GPS time and navigation systems. The system is built upon the methodology and technology developed for the Alvin Frame-Grabber and the JasonII Virtual Control Van system. A beta-version was deployed on the R/V Atlantis AT11-16 cruise in the summer of 2004 and the system has subsequently been installed on the R/V Knorr and Oceanus.

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