• GB close
• PL close
• DE close
• CH close
• Thematic: No close

SABIO-RK is a database for biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured.

The Maria Curie-Skłodowska University Base of Knowledge contains information about ongoing scientific, research and implementation works, as well as publications, reports on research conducted with public funds, defended doctoral theses, teaching activities and completed diploma theses in first- and second-cycle studies. The system records information on the scientific achievements of employees, doctoral students and students, collected in accordance with the requirements specified for the evaluation of employees and scientific units. The Repository, which is an important part of the system, archives digitally the full texts of materials documenting the work being carried out, including: monographs, articles, book chapters and reports, as well as the texts of works constituting the basis for awarding scientific degrees and titles. Access to these works may be limited only by the conditions specified in contracts between authors and owners of economic rights to the work (publishers, institutions financing research). The principles of operation of the system are specified in Order No. 53/2022 of the Rector of the Maria Curie-Skłodowska University in Lublin of May 23, 2022 on the introduction of the Knowledge Base Regulations.

The Eukaryotic Promoter Database (EPD) provides accurate transcription start site (TSS) information for promoters of 15 model organisms, from human to yeast to the malaria parasite Plasmodium falciparum. While the original database was a manually curated database based on published experiments, new promoter collections are now produced entirely automatically (under the name “EPDnew”) based on high-throughput transcript mapping data and high-quality gene annotation resources. Corresponding functional genomics data can be viewed in a genome browser, queried or analyzed via web interfaces, or exported in standard formats like FASTA or BED for subsequent analysis with other tools; of note, EPD is tightly integrated with two tool suites developed by our group: ChIP-Seq and Signal Search Analysis, for analysis of chromatin context and sequence motif respectively. EPD provides promoter viewers, designed with the aim of integrating and displaying information from different sources about, for instance, histone marks, transcription factor-binding sites or SNPs with known phenotypes. These viewers rely upon the UCSC genome browser as a visualization platform, which enables users to view data tracks from EPD jointly with tracks from UCSC or public track hubs.

This site provides access to the student output of the institution. The interface is available in German and English.

The mission of BioStudies is to provide access to all the data outputs of a life sciences study from a single place, by organising links to data in other databases at EMBL-EBI or elsewhere, as well as hosting data and metadata that do not fit anywhere else. The database accepts submissions via an online tool, or in a simple tab-delimited format. BioStudies provides rich mechanisms for defining and using metadata guidelines specific for a particular data source such as a project or a community, and organises datasets in collections.