- GB
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- Thematic: No
- GB
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- Thematic: No
- Institutional Repository United States Compatibility:Not yet registeredPartners:Rockefeller UniversityRockefeller University
This site provides access to the research outputs of the The Rockefeller University. Users may set up RSS feeds to be alerted to new content. The interface is available in English.
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re3data: r3d100012166
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re3data: r3d100014590
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re3data: r3d100012273
Curated repository for small angle scattering data and models. SASBDB contains X-ray (SAXS) and neutron (SANS) scattering data from biological macromolecules in solution.
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For further information contact us at helpdesk@openaire.eu - Data Repository Switzerland Compatibility:Not yet registeredPartners:UZH Life Science, Biochemistry, Atomic coordinateUZH
MINAS contains the exact geometric information on the first and second-shell coordinating ligands of every metal ion present in nucleic acid structures that are deposited in the PDB and NDB. Containing also the sequence information of the binding pocket-proximal nucleotides, this database allows for a detailed search of all combinations of potential ligands and of coordination environments of metal ions. MINAS is therefore a perfect new tool to classify metal ion binding pockets in nucleic acids by statistics and to draw general conclusions about the different coordination properties of these ions. This record has been marked as Uncertain because the homepage for this resource is no longer active, and we have not been able to get in touch with the owners of the resource. Please contact us if you have any information regarding MINAS.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Department of Dermatology, Yale University, New Haven, Department of Dermatology, Kligman Laboratories, Perelman School of Medicine at the University of Pennsylvania Computational Biology, Imaging, ligandDepartment of Dermatology, Yale University, New Haven,Department of Dermatology, Kligman Laboratories, Perelman School of Medicine at the University of Pennsylvania
(a) Ligand-Receptor Interaction Explorer to explore ligand-receptor interaction database, and (b) Cell- Cell Communication Atlas Explorer to explore the cell-cell communications for any given scRNA-seq dataset processed by the R toolkit CellChat
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For further information contact us at helpdesk@openaire.eu - Data Repository Poland Compatibility:Not yet registeredPartners:Bujnicki Lab, Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw (IIMCB), Warsaw, Poland Life Science, RNA sequence, ribonucleic acidBujnicki Lab, Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw (IIMCB), Warsaw, Poland
MODOMICS is the first comprehensive database system for biology of RNA modification. It integrates information about the chemical structure of modified nucleosides, their localization in RNA sequences, pathways of their biosynthesis and enzymes that carry out the respective reactions (together with their protein cofactors). Also included are the protein sequences, the structure data (if available), selected references from scientific literature, and links to other databases allowing to obtain comprehensive information about individual modified residues and proteins involved in their biosynthesis.
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- Institutional Repository United States Compatibility:Not yet registeredPartners:Rockefeller UniversityRockefeller University
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re3data: r3d100012166
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Curated repository for small angle scattering data and models. SASBDB contains X-ray (SAXS) and neutron (SANS) scattering data from biological macromolecules in solution.
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For further information contact us at helpdesk@openaire.eu - Data Repository Switzerland Compatibility:Not yet registeredPartners:UZH Life Science, Biochemistry, Atomic coordinateUZH
MINAS contains the exact geometric information on the first and second-shell coordinating ligands of every metal ion present in nucleic acid structures that are deposited in the PDB and NDB. Containing also the sequence information of the binding pocket-proximal nucleotides, this database allows for a detailed search of all combinations of potential ligands and of coordination environments of metal ions. MINAS is therefore a perfect new tool to classify metal ion binding pockets in nucleic acids by statistics and to draw general conclusions about the different coordination properties of these ions. This record has been marked as Uncertain because the homepage for this resource is no longer active, and we have not been able to get in touch with the owners of the resource. Please contact us if you have any information regarding MINAS.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Department of Dermatology, Yale University, New Haven, Department of Dermatology, Kligman Laboratories, Perelman School of Medicine at the University of Pennsylvania Computational Biology, Imaging, ligandDepartment of Dermatology, Yale University, New Haven,Department of Dermatology, Kligman Laboratories, Perelman School of Medicine at the University of Pennsylvania
(a) Ligand-Receptor Interaction Explorer to explore ligand-receptor interaction database, and (b) Cell- Cell Communication Atlas Explorer to explore the cell-cell communications for any given scRNA-seq dataset processed by the R toolkit CellChat
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For further information contact us at helpdesk@openaire.eu - Data Repository Poland Compatibility:Not yet registeredPartners:Bujnicki Lab, Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw (IIMCB), Warsaw, Poland Life Science, RNA sequence, ribonucleic acidBujnicki Lab, Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw (IIMCB), Warsaw, Poland
MODOMICS is the first comprehensive database system for biology of RNA modification. It integrates information about the chemical structure of modified nucleosides, their localization in RNA sequences, pathways of their biosynthesis and enzymes that carry out the respective reactions (together with their protein cofactors). Also included are the protein sequences, the structure data (if available), selected references from scientific literature, and links to other databases allowing to obtain comprehensive information about individual modified residues and proteins involved in their biosynthesis.
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