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5,748 Data sources

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  • DZ
  • Thematic: No

  • The Database of Genomic Variants archive (DGVa) is a repository that provides archiving, accessioning and distribution of publicly available genomic structural variants, in all species.

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  • This site provides access to the research output of the institution. Users may set up Atom or RSS feeds to be alerted to new content. The interface is available in English.

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  • University repository providing access to the output of the University of Amsterdam.

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  • The Therapeutic Structural Antibody Database tracks all antibody- and nanobody-related therapeutics recognized by the World Health Organisation (WHO), and identifies any corresponding structures in the Structural Antibody Database (SAbDab) with near-exact or exact variable domain sequence matches. Thera-SAbDab is synchronized with SAbDab to update weekly, reflecting new Protein Data Bank entries and the availability of new sequence data published by the WHO. Each therapeutic summary page lists structural coverage (with links to the appropriate SAbDab entries), alignments showing where any near-matches deviate in sequence, and accompanying metadata, such as intended target and investigated conditions. Thera-SAbDab can be queried by therapeutic name, by a combination of metadata, or by variable domain sequence - returning all therapeutics that are within a specified sequence identity over a specified region of the query. The sequences of all therapeutics listed in Thera-SAbDab are downloadable as a single file with accompanying metadata.

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  • DPVweb provides a central source of information about viruses, viroids and satellites of plants, fungi and protozoa. Comprehensive taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences are provided. The database also holds detailed, curated, information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene. The database will not be updated with sequence or taxonomic data from Aug 2013.

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  • This site is a university repository providing access to the publication output of the institution. Some items may not be available as full-text.

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  • The Biodiversity Literature Repository (BLR) is a research infrastructure (RI) comprising the BLR Community on Zenodo at the European Center for Nuclear Research (CERN), and services to search and retrieve the data (Ocellus, Zenodeo API, BLR website). BLR’s focus is on biodiversity data liberated from scholarly publications, and it uses custom metadata linking to external vocabularies covering the needs of the biodiversity community. This includes taxonomic treatment or figures as well as the deposit of the original article annotated with metadata describing the data contained in the articles itself, as well as related identifiers for figures and and treatments therein. The main data import is through TreatmentBank or via publishers such as Pensoft. With over 650,000 deposits, BLR is the single largest community in Zenodo. It’s data is widely reused, for example by the Global Biodiversity Information Facility (GBIF). All data in BLR is published under the CC0 Public Domain Dedication, remaining free for anyone to use, anywhere, for any purpose. Note from the FAIRsharing team: we have classified the status of the resource as 'uncertain' because the content of the database is no longer accessible. We are making every effort to engage with the resource owners to understand if it is a temporary issue or if the resource is no longer active.

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5,748 Data sources
  • The Database of Genomic Variants archive (DGVa) is a repository that provides archiving, accessioning and distribution of publicly available genomic structural variants, in all species.

    more_vert
  • This site provides access to the research output of the institution. Users may set up Atom or RSS feeds to be alerted to new content. The interface is available in English.

    more_vert
  • University repository providing access to the output of the University of Amsterdam.

    more_vert
  • more_vert
  • The Therapeutic Structural Antibody Database tracks all antibody- and nanobody-related therapeutics recognized by the World Health Organisation (WHO), and identifies any corresponding structures in the Structural Antibody Database (SAbDab) with near-exact or exact variable domain sequence matches. Thera-SAbDab is synchronized with SAbDab to update weekly, reflecting new Protein Data Bank entries and the availability of new sequence data published by the WHO. Each therapeutic summary page lists structural coverage (with links to the appropriate SAbDab entries), alignments showing where any near-matches deviate in sequence, and accompanying metadata, such as intended target and investigated conditions. Thera-SAbDab can be queried by therapeutic name, by a combination of metadata, or by variable domain sequence - returning all therapeutics that are within a specified sequence identity over a specified region of the query. The sequences of all therapeutics listed in Thera-SAbDab are downloadable as a single file with accompanying metadata.

    more_vert
  • DPVweb provides a central source of information about viruses, viroids and satellites of plants, fungi and protozoa. Comprehensive taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences are provided. The database also holds detailed, curated, information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene. The database will not be updated with sequence or taxonomic data from Aug 2013.

    more_vert
  • more_vert
  • This site is a university repository providing access to the publication output of the institution. Some items may not be available as full-text.

    more_vert
  • The Biodiversity Literature Repository (BLR) is a research infrastructure (RI) comprising the BLR Community on Zenodo at the European Center for Nuclear Research (CERN), and services to search and retrieve the data (Ocellus, Zenodeo API, BLR website). BLR’s focus is on biodiversity data liberated from scholarly publications, and it uses custom metadata linking to external vocabularies covering the needs of the biodiversity community. This includes taxonomic treatment or figures as well as the deposit of the original article annotated with metadata describing the data contained in the articles itself, as well as related identifiers for figures and and treatments therein. The main data import is through TreatmentBank or via publishers such as Pensoft. With over 650,000 deposits, BLR is the single largest community in Zenodo. It’s data is widely reused, for example by the Global Biodiversity Information Facility (GBIF). All data in BLR is published under the CC0 Public Domain Dedication, remaining free for anyone to use, anywhere, for any purpose. Note from the FAIRsharing team: we have classified the status of the resource as 'uncertain' because the content of the database is no longer accessible. We are making every effort to engage with the resource owners to understand if it is a temporary issue or if the resource is no longer active.

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