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- Institutional Repository France Compatibility:Not yet registeredPartners:UGAUGAAll Research products
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:GBIF France Life Science, Biodiversity, Taxonomic classificationGBIF France
GBIF France hosts this data repository on behalf of GBIF Guinea in collaboration with the GBIF Secretariat, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). GBIF-GUINEE is established within the Centre d'Observation de Surveillance et d'Information Environnementales (COSIE) , the signatory of the GBIF Memorandum of Understanding, as a specialized team working on the collection of biodiversity occurrence data from data publishers to enable their publication on the Internet. The node of GBIF-GUINEE is mandated to collect species occurrence data on the national and international level in order to make these available to data users and decision makers. The data collected and disseminated by COSIE enable the generation of statistics to support decision making by authorities, in order to integrate ecological considerations into programmes and plans for the socio-economic development of Guniea. These ecological considerations have the goal of protection of the environment and biological diversity.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:University of Hull Life Science, Computer Science, PhysicsUniversity of Hull
re3data: r3d100011525
The Hydra repository was a digital archive for the University of Hull. It was developed to hold, manage, preserve and provide access to the growing body of digital material generated through the research, teaching and administrative activities of the University.
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The Therapeutic Structural Antibody Database tracks all antibody- and nanobody-related therapeutics recognized by the World Health Organisation (WHO), and identifies any corresponding structures in the Structural Antibody Database (SAbDab) with near-exact or exact variable domain sequence matches. Thera-SAbDab is synchronized with SAbDab to update weekly, reflecting new Protein Data Bank entries and the availability of new sequence data published by the WHO. Each therapeutic summary page lists structural coverage (with links to the appropriate SAbDab entries), alignments showing where any near-matches deviate in sequence, and accompanying metadata, such as intended target and investigated conditions. Thera-SAbDab can be queried by therapeutic name, by a combination of metadata, or by variable domain sequence - returning all therapeutics that are within a specified sequence identity over a specified region of the query. The sequences of all therapeutics listed in Thera-SAbDab are downloadable as a single file with accompanying metadata.
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re3data: r3d100011870
IndExs is a database comprising information on exsiccatae (=exsiccatal series) with titles, abbreviations, bibliography and provides a unique and persistent Exsiccata ID for each series. Exsiccatae are defined as "published, uniform, numbered sets of preserved specimens distributed with printed labels" (Pfister 1985). Please note that there are two similar latin terms: "exsiccata, ae" is feminine and used for a set of dried specimens as defined above, whereas the term "exsiccatum, i" is neutral and used for dried specimens in general. If available, images of one or more examplary labels are added to give layout information. IndExs is powered by the Diversity Workbench database framework.
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The Pathway Interaction Database is a highly-structured, curated collection of information about known biomolecular interactions and key cellular processes assembled into signaling pathways.
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re3data: r3d100010629
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Ocean Gene Atlas(OGA) is a webservice to explore the biogeography of marine genes based on sequence similarity with environmental genomics datasets. OGA is currently implemented with the Tara Ocean Microbiome-Reference Gene Catalog database and the Marine Atlas of Tara Ocean Unigenes. Gene abundance estimates are computed for DNA metagenomes from the smallest Tara Oceans size fractions (from 0 to 3 µm, OM-RGC), and for RNA metatranscriptomes from Tara Oceans larger size fractions (0.8 to 2000µm, MATOU). OGA also includes curated Tara Oceans Eukaryotic Metagenome and Single-Cell Assembled Genomes (MAGs and SAGs), metagenomics-based transcriptomes (MGTs) and metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean (Arctic MAG+G).
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- Institutional Repository France Compatibility:Not yet registeredPartners:UGAUGAAll Research products
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GBIF France hosts this data repository on behalf of GBIF Guinea in collaboration with the GBIF Secretariat, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). GBIF-GUINEE is established within the Centre d'Observation de Surveillance et d'Information Environnementales (COSIE) , the signatory of the GBIF Memorandum of Understanding, as a specialized team working on the collection of biodiversity occurrence data from data publishers to enable their publication on the Internet. The node of GBIF-GUINEE is mandated to collect species occurrence data on the national and international level in order to make these available to data users and decision makers. The data collected and disseminated by COSIE enable the generation of statistics to support decision making by authorities, in order to integrate ecological considerations into programmes and plans for the socio-economic development of Guniea. These ecological considerations have the goal of protection of the environment and biological diversity.
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re3data: r3d100011525
The Hydra repository was a digital archive for the University of Hull. It was developed to hold, manage, preserve and provide access to the growing body of digital material generated through the research, teaching and administrative activities of the University.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:University of Oxford Biotherapeutics, Structural Biology, immunoglobulin complex, circulatingUniversity of Oxford
The Therapeutic Structural Antibody Database tracks all antibody- and nanobody-related therapeutics recognized by the World Health Organisation (WHO), and identifies any corresponding structures in the Structural Antibody Database (SAbDab) with near-exact or exact variable domain sequence matches. Thera-SAbDab is synchronized with SAbDab to update weekly, reflecting new Protein Data Bank entries and the availability of new sequence data published by the WHO. Each therapeutic summary page lists structural coverage (with links to the appropriate SAbDab entries), alignments showing where any near-matches deviate in sequence, and accompanying metadata, such as intended target and investigated conditions. Thera-SAbDab can be queried by therapeutic name, by a combination of metadata, or by variable domain sequence - returning all therapeutics that are within a specified sequence identity over a specified region of the query. The sequences of all therapeutics listed in Thera-SAbDab are downloadable as a single file with accompanying metadata.
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re3data: r3d100011870
IndExs is a database comprising information on exsiccatae (=exsiccatal series) with titles, abbreviations, bibliography and provides a unique and persistent Exsiccata ID for each series. Exsiccatae are defined as "published, uniform, numbered sets of preserved specimens distributed with printed labels" (Pfister 1985). Please note that there are two similar latin terms: "exsiccata, ae" is feminine and used for a set of dried specimens as defined above, whereas the term "exsiccatum, i" is neutral and used for dried specimens in general. If available, images of one or more examplary labels are added to give layout information. IndExs is powered by the Diversity Workbench database framework.
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For further information contact us at helpdesk@openaire.eu - Data Repository Pakistan Compatibility:Not yet registeredPartners:NIH Life Science, signaling, molecular interactionNIH
The Pathway Interaction Database is a highly-structured, curated collection of information about known biomolecular interactions and key cellular processes assembled into signaling pathways.
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For further information contact us at helpdesk@openaire.eu - Data Repository Slovakia, Lithuania, Czech Republic, Greece, Poland, Italy, Germany, Denmark, Hungary Compatibility:Not yet registeredPartners:SGIDŠ, ITG, MGL, CGS, CGS +7 partners Natural Sciences, Geosciences (including Geography), Geosciences (including Geography)SGIDŠ,ITG,MGL,CGS,CGS,PGI,GLD,LIAG,GEUS,ITSAK,ELGI,GCX
re3data: r3d100010629
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:LPL Phylogeny, Metagenomics, GenomicsLPL
Ocean Gene Atlas(OGA) is a webservice to explore the biogeography of marine genes based on sequence similarity with environmental genomics datasets. OGA is currently implemented with the Tara Ocean Microbiome-Reference Gene Catalog database and the Marine Atlas of Tara Ocean Unigenes. Gene abundance estimates are computed for DNA metagenomes from the smallest Tara Oceans size fractions (from 0 to 3 µm, OM-RGC), and for RNA metatranscriptomes from Tara Oceans larger size fractions (0.8 to 2000µm, MATOU). OGA also includes curated Tara Oceans Eukaryotic Metagenome and Single-Cell Assembled Genomes (MAGs and SAGs), metagenomics-based transcriptomes (MGTs) and metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean (Arctic MAG+G).
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