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- Institutional Repository United Kingdom Compatibility:collected from a compatible aggregatorPartners:University of Cumbria MultidisciplinaryUniversity of Cumbria
This site provides access to the output of the institution. Users may set up RSS feeds to be alerted to new content. The interface is in English.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom, United States Compatibility:Not yet registeredPartners:EBI, NYU Langone Health, NYU School of Medicine, UD, DOI, NCHGR Life Sciences, Microbiology, Virology and Immunology, Metabolism, Biochemistry and Genetics of MicroorganismsEBI,NYU Langone Health, NYU School of Medicine,UD,DOI,NCHGR
re3data: r3d100012230
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For further information contact us at helpdesk@openaire.eu - Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:WMC Biomedical Science, mutation analysis, mutationWMC
mirDNMR is a database for the collection of gene-centered background DNMRs obtained from different methods and population variation data. The database has the following functions: (i) browse and search the background DNMRs of each gene predicted by four different methods, including GC content (DNMR-GC), sequence context (DNMR-SC), multiple factors (DNMR-MF) and local DNA methylation level (DNMR-DM); (ii) search variant frequencies in publicly available databases, including ExAC, ESP6500, UK10K, 1000G and dbSNP and (iii) investigate the DNM burden to prioritize candidate genes based on the four background DNMRs using three statistical methods (TADA, Binomial and Poisson test). In conclusion, mirDNMR can be widely used to identify the genetic basis of sporadic genetic diseases.
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The PR2 reference sequence database began as part of the BioMarks project from previous work in the Plankton Group of the Station Biologique of Roscoff. It aims to provide a reference database of carefully annotated 18S rRNA sequences using nine unique taxonomic fields (from domain to species). At present, it contains over 240,000 sequences. Although it focuses on protists, it also contains sequences from metazoa, fungi and plants as well a limited set of 16S sequences from plastids and bacteria. Several metadata fields are available for many sequences, including geo-localisation, whether it originates from a culture or a natural sample, and host type. The annotation of PR2 is performed by experts in each of the taxonomic groups.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK, Institute of Structural and Molecular Biology, University College London, London, UK Life Science, Protein domain, Gene nameCambridge Systems Biology Centre, University of Cambridge, Cambridge, UK,Institute of Structural and Molecular Biology, University College London, London, UK
re3data: r3d100011478
PomBase is a model organism database that provides organization of and access to scientific data for the fission yeast Schizosaccharomyces pombe. PomBase supports genomic sequence and features, genome-wide datasets and manual literature curation as well as providing structural and functional annotation and access to large-scale data sets.
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:GBIF France Life Science, Biodiversity, Taxonomic classificationGBIF France
GBIF France hosts this data repository on behalf of GBIF Guinea in collaboration with the GBIF Secretariat, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). GBIF-GUINEE is established within the Centre d'Observation de Surveillance et d'Information Environnementales (COSIE) , the signatory of the GBIF Memorandum of Understanding, as a specialized team working on the collection of biodiversity occurrence data from data publishers to enable their publication on the Internet. The node of GBIF-GUINEE is mandated to collect species occurrence data on the national and international level in order to make these available to data users and decision makers. The data collected and disseminated by COSIE enable the generation of statistics to support decision making by authorities, in order to integrate ecological considerations into programmes and plans for the socio-economic development of Guniea. These ecological considerations have the goal of protection of the environment and biological diversity.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:University of Hull Life Science, Computer Science, PhysicsUniversity of Hull
re3data: r3d100011525
The Hydra repository was a digital archive for the University of Hull. It was developed to hold, manage, preserve and provide access to the growing body of digital material generated through the research, teaching and administrative activities of the University.
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For further information contact us at helpdesk@openaire.eu - Data Repository Germany Compatibility:Not yet registeredPartners:Sächsische Landesbibliothek – Staats- und Universitätsbibliothek Dresden, SLUBArchiv.digital, DFG, SLUB Humanities and Social Sciences, History, History of ScienceSächsische Landesbibliothek – Staats- und Universitätsbibliothek Dresden, SLUBArchiv.digital,DFG,SLUB
re3data: r3d100011806
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For further information contact us at helpdesk@openaire.eu - Data Repository Greece, Czech Republic, Slovakia, Poland, Italy, Lithuania, Denmark, Hungary, Germany Compatibility:Not yet registeredPartners:ITSAK, MGL, GCX, PIG, CGS +7 partners Natural Sciences, Geosciences (including Geography), Geosciences (including Geography)ITSAK,MGL,GCX,PIG,CGS,GLD,ITG,GEUS,ELGI,SGIDŠ,CGS,LIAG
re3data: r3d100010629
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- Institutional Repository United Kingdom Compatibility:collected from a compatible aggregatorPartners:University of Cumbria MultidisciplinaryUniversity of Cumbria
This site provides access to the output of the institution. Users may set up RSS feeds to be alerted to new content. The interface is in English.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom, United States Compatibility:Not yet registeredPartners:EBI, NYU Langone Health, NYU School of Medicine, UD, DOI, NCHGR Life Sciences, Microbiology, Virology and Immunology, Metabolism, Biochemistry and Genetics of MicroorganismsEBI,NYU Langone Health, NYU School of Medicine,UD,DOI,NCHGR
re3data: r3d100012230
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For further information contact us at helpdesk@openaire.eu - Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:WMC Biomedical Science, mutation analysis, mutationWMC
mirDNMR is a database for the collection of gene-centered background DNMRs obtained from different methods and population variation data. The database has the following functions: (i) browse and search the background DNMRs of each gene predicted by four different methods, including GC content (DNMR-GC), sequence context (DNMR-SC), multiple factors (DNMR-MF) and local DNA methylation level (DNMR-DM); (ii) search variant frequencies in publicly available databases, including ExAC, ESP6500, UK10K, 1000G and dbSNP and (iii) investigate the DNM burden to prioritize candidate genes based on the four background DNMRs using three statistical methods (TADA, Binomial and Poisson test). In conclusion, mirDNMR can be widely used to identify the genetic basis of sporadic genetic diseases.
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For further information contact us at helpdesk@openaire.eu - Data Repository France, Spain Compatibility:Not yet registeredPartners:CNRS, IBE Taxonomy, Genetics, Taxonomic classificationCNRS,IBE
The PR2 reference sequence database began as part of the BioMarks project from previous work in the Plankton Group of the Station Biologique of Roscoff. It aims to provide a reference database of carefully annotated 18S rRNA sequences using nine unique taxonomic fields (from domain to species). At present, it contains over 240,000 sequences. Although it focuses on protists, it also contains sequences from metazoa, fungi and plants as well a limited set of 16S sequences from plastids and bacteria. Several metadata fields are available for many sequences, including geo-localisation, whether it originates from a culture or a natural sample, and host type. The annotation of PR2 is performed by experts in each of the taxonomic groups.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK, Institute of Structural and Molecular Biology, University College London, London, UK Life Science, Protein domain, Gene nameCambridge Systems Biology Centre, University of Cambridge, Cambridge, UK,Institute of Structural and Molecular Biology, University College London, London, UK
re3data: r3d100011478
PomBase is a model organism database that provides organization of and access to scientific data for the fission yeast Schizosaccharomyces pombe. PomBase supports genomic sequence and features, genome-wide datasets and manual literature curation as well as providing structural and functional annotation and access to large-scale data sets.
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:GBIF France Life Science, Biodiversity, Taxonomic classificationGBIF France
GBIF France hosts this data repository on behalf of GBIF Guinea in collaboration with the GBIF Secretariat, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). GBIF-GUINEE is established within the Centre d'Observation de Surveillance et d'Information Environnementales (COSIE) , the signatory of the GBIF Memorandum of Understanding, as a specialized team working on the collection of biodiversity occurrence data from data publishers to enable their publication on the Internet. The node of GBIF-GUINEE is mandated to collect species occurrence data on the national and international level in order to make these available to data users and decision makers. The data collected and disseminated by COSIE enable the generation of statistics to support decision making by authorities, in order to integrate ecological considerations into programmes and plans for the socio-economic development of Guniea. These ecological considerations have the goal of protection of the environment and biological diversity.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:University of Hull Life Science, Computer Science, PhysicsUniversity of Hull
re3data: r3d100011525
The Hydra repository was a digital archive for the University of Hull. It was developed to hold, manage, preserve and provide access to the growing body of digital material generated through the research, teaching and administrative activities of the University.
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For further information contact us at helpdesk@openaire.eu - Data Repository Germany Compatibility:Not yet registeredPartners:Sächsische Landesbibliothek – Staats- und Universitätsbibliothek Dresden, SLUBArchiv.digital, DFG, SLUB Humanities and Social Sciences, History, History of ScienceSächsische Landesbibliothek – Staats- und Universitätsbibliothek Dresden, SLUBArchiv.digital,DFG,SLUB
re3data: r3d100011806
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For further information contact us at helpdesk@openaire.eu - Data Repository Greece, Czech Republic, Slovakia, Poland, Italy, Lithuania, Denmark, Hungary, Germany Compatibility:Not yet registeredPartners:ITSAK, MGL, GCX, PIG, CGS +7 partners Natural Sciences, Geosciences (including Geography), Geosciences (including Geography)ITSAK,MGL,GCX,PIG,CGS,GLD,ITG,GEUS,ELGI,SGIDŠ,CGS,LIAG
re3data: r3d100010629
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