- CN
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- Thematic: No
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- Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:Ming Chen's Lab, Zhejiang University, Hangzhou, China Life Science, Gene name, DNA sequenceMing Chen's Lab, Zhejiang University, Hangzhou, China
Natural Antisense Transcripts (NATs), a kind of regulatory RNAs, occur prevalently in plant genomes and play significant roles in physiological and/or pathological processes. PlantNATsDB (Plant Natural Antisense Transcripts DataBase) is a platform for annotating and discovering NATs by integrating various data sources. PlantNATsDB also provides an integrative, interactive and information-rich web graphical interface to display multidimensional data, and facilitate plant research community and the discovery of functional NATs.
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:LPL Phylogeny, Metagenomics, GenomicsLPL
Ocean Gene Atlas(OGA) is a webservice to explore the biogeography of marine genes based on sequence similarity with environmental genomics datasets. OGA is currently implemented with the Tara Ocean Microbiome-Reference Gene Catalog database and the Marine Atlas of Tara Ocean Unigenes. Gene abundance estimates are computed for DNA metagenomes from the smallest Tara Oceans size fractions (from 0 to 3 µm, OM-RGC), and for RNA metatranscriptomes from Tara Oceans larger size fractions (0.8 to 2000µm, MATOU). OGA also includes curated Tara Oceans Eukaryotic Metagenome and Single-Cell Assembled Genomes (MAGs and SAGs), metagenomics-based transcriptomes (MGTs) and metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean (Arctic MAG+G).
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For further information contact us at helpdesk@openaire.eu - Data Repository Colombia, United States, France Compatibility:Not yet registeredPartners:Alliance of Bioversity and CIAT, CIAT , Harvard Dataverse, CGIAR Life Sciences, Plant Sciences, Agriculture, Forestry, Horticulture and Veterinary MedicineAlliance of Bioversity and CIAT,CIAT ,Harvard Dataverse,CGIAR
re3data: r3d100011880
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:ICBMS Biology, Protein interactions, carbohydrateICBMS
re3data: r3d100010672
MatrixDB stores experimental data established by full-length proteins, matricryptins, glycosaminoglycans, lipids and cations. MatrixDB reports interactions with individual polypeptide chains or with multimers (e.g. collagens, laminins, thrombospondins) when appropriate. Multimers are treated as permanent complexes, referencing EBI identifiers when possible. Human interactions were inferred from non-human homologous interactions when available.
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For further information contact us at helpdesk@openaire.eu - Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:State Key Laboratory of Microbial Technology, Shandong University, Jinan, China Life Science, structure, hydrophobicityState Key Laboratory of Microbial Technology, Shandong University, Jinan, China
Indel Flanking Region Database is an online resource for indels (insertion/deletions) and the flanking regions of proteins in SCOP superfamilies. It aims at providing a comprehensive dataset for analyzing the qualities of amino acid indels, substitutions and the relationship between them.
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For further information contact us at helpdesk@openaire.eu - Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:NGDC, CNCB / BIG, CAS Plant Genetics, Botany, TranscriptomicsNGDC, CNCB / BIG, CAS
The Leaf Senescence Database (LSD) is a comprehensive resource of senescence-associated genes (SAGs) and their corresponding mutants. LSD includes data types such as leaf senescence-associated transcriptomics, phenotype and interaction data.
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:OSUPS, IAS, CNRS, CNRS, IDOC +1 partners Natural Sciences, Astrophysics and Astronomy, PhysicsOSUPS,IAS,CNRS,CNRS,IDOC,IAS
re3data: r3d100013592
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For further information contact us at helpdesk@openaire.eu - Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:CBI Genomics, cell adhesion, small moleculeCBI
OKCAM (Ontology-based Knowledgebase for Cell Adhesion Molecules) is an online resource for human genes known or predicted to be related to the processes of cell adhesion. These genes include members of the cadherin, immunoglobulin/FibronectinIII (IgFn), integrin, neurexin, neuroligin, and catenin families.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States, France, Netherlands Compatibility:Not yet registeredPartners:AMU, CNRS, CCIN2P3, CINES, CNRS +5 partners Humanities and Social Sciences, Linguistics, HumanitiesAMU,CNRS,CCIN2P3,CINES,CNRS,AMU,CLARIN,Université de Provence, Aix-Marseille I, Laboratoire parole et langage,HN,ORTOLANG
re3data: r3d100010828
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For further information contact us at helpdesk@openaire.eu - Data Repository France, Benin Compatibility:Not yet registeredPartners:Africa Rice Center Donors, CGIAR, WARDA, RICE CRP Life Sciences, Agriculture, Forestry, Horticulture and Veterinary MedicineAfrica Rice Center Donors,CGIAR,WARDA,RICE CRP
re3data: r3d100011251
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- Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:Ming Chen's Lab, Zhejiang University, Hangzhou, China Life Science, Gene name, DNA sequenceMing Chen's Lab, Zhejiang University, Hangzhou, China
Natural Antisense Transcripts (NATs), a kind of regulatory RNAs, occur prevalently in plant genomes and play significant roles in physiological and/or pathological processes. PlantNATsDB (Plant Natural Antisense Transcripts DataBase) is a platform for annotating and discovering NATs by integrating various data sources. PlantNATsDB also provides an integrative, interactive and information-rich web graphical interface to display multidimensional data, and facilitate plant research community and the discovery of functional NATs.
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:LPL Phylogeny, Metagenomics, GenomicsLPL
Ocean Gene Atlas(OGA) is a webservice to explore the biogeography of marine genes based on sequence similarity with environmental genomics datasets. OGA is currently implemented with the Tara Ocean Microbiome-Reference Gene Catalog database and the Marine Atlas of Tara Ocean Unigenes. Gene abundance estimates are computed for DNA metagenomes from the smallest Tara Oceans size fractions (from 0 to 3 µm, OM-RGC), and for RNA metatranscriptomes from Tara Oceans larger size fractions (0.8 to 2000µm, MATOU). OGA also includes curated Tara Oceans Eukaryotic Metagenome and Single-Cell Assembled Genomes (MAGs and SAGs), metagenomics-based transcriptomes (MGTs) and metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean (Arctic MAG+G).
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For further information contact us at helpdesk@openaire.eu - Data Repository Colombia, United States, France Compatibility:Not yet registeredPartners:Alliance of Bioversity and CIAT, CIAT , Harvard Dataverse, CGIAR Life Sciences, Plant Sciences, Agriculture, Forestry, Horticulture and Veterinary MedicineAlliance of Bioversity and CIAT,CIAT ,Harvard Dataverse,CGIAR
re3data: r3d100011880
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:ICBMS Biology, Protein interactions, carbohydrateICBMS
re3data: r3d100010672
MatrixDB stores experimental data established by full-length proteins, matricryptins, glycosaminoglycans, lipids and cations. MatrixDB reports interactions with individual polypeptide chains or with multimers (e.g. collagens, laminins, thrombospondins) when appropriate. Multimers are treated as permanent complexes, referencing EBI identifiers when possible. Human interactions were inferred from non-human homologous interactions when available.
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Indel Flanking Region Database is an online resource for indels (insertion/deletions) and the flanking regions of proteins in SCOP superfamilies. It aims at providing a comprehensive dataset for analyzing the qualities of amino acid indels, substitutions and the relationship between them.
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For further information contact us at helpdesk@openaire.eu - Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:NGDC, CNCB / BIG, CAS Plant Genetics, Botany, TranscriptomicsNGDC, CNCB / BIG, CAS
The Leaf Senescence Database (LSD) is a comprehensive resource of senescence-associated genes (SAGs) and their corresponding mutants. LSD includes data types such as leaf senescence-associated transcriptomics, phenotype and interaction data.
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:OSUPS, IAS, CNRS, CNRS, IDOC +1 partners Natural Sciences, Astrophysics and Astronomy, PhysicsOSUPS,IAS,CNRS,CNRS,IDOC,IAS
re3data: r3d100013592
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For further information contact us at helpdesk@openaire.eu - Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:CBI Genomics, cell adhesion, small moleculeCBI
OKCAM (Ontology-based Knowledgebase for Cell Adhesion Molecules) is an online resource for human genes known or predicted to be related to the processes of cell adhesion. These genes include members of the cadherin, immunoglobulin/FibronectinIII (IgFn), integrin, neurexin, neuroligin, and catenin families.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States, France, Netherlands Compatibility:Not yet registeredPartners:AMU, CNRS, CCIN2P3, CINES, CNRS +5 partners Humanities and Social Sciences, Linguistics, HumanitiesAMU,CNRS,CCIN2P3,CINES,CNRS,AMU,CLARIN,Université de Provence, Aix-Marseille I, Laboratoire parole et langage,HN,ORTOLANG
re3data: r3d100010828
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re3data: r3d100011251
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