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DNAmod is an open-source database (https://dnamod.hoffmanlab.org) that catalogues DNA modifications and provides a single source to learn about their properties. The database annotates the chemical properties and structures of all curated modified DNA bases, and a much larger list of candidate chemical entities. DNAmod includes manual annotations of available sequencing methods, descriptions of their occurrence in nature, and provides existing and suggested nomenclature. DNAmod enables researchers to rapidly review previous work, select mapping techniques, and track recent developments concerning modified bases of interest.
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re3data: r3d100013022
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The PR2 reference sequence database began as part of the BioMarks project from previous work in the Plankton Group of the Station Biologique of Roscoff. It aims to provide a reference database of carefully annotated 18S rRNA sequences using nine unique taxonomic fields (from domain to species). At present, it contains over 240,000 sequences. Although it focuses on protists, it also contains sequences from metazoa, fungi and plants as well a limited set of 16S sequences from plastids and bacteria. Several metadata fields are available for many sequences, including geo-localisation, whether it originates from a culture or a natural sample, and host type. The annotation of PR2 is performed by experts in each of the taxonomic groups.
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This site is a university repository providing access to the publication output of the institution. The contents of the repository reflect the interests of the institution and are heavily weighted towards applied sciences and technologies. The site offers in addition to the standard searching options, a concept search construction tool. The site interface is in Catalan, Spanish and English.
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- Institutional Repository Spain Compatibility:Not yet registeredPartners:Fundación Juan MarchFundación Juan MarchAll Research products
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re3data: r3d100013918
DNAmod is an open-source database (https://dnamod.hoffmanlab.org) that catalogues DNA modifications and provides a single source to learn about their properties. The database annotates the chemical properties and structures of all curated modified DNA bases, and a much larger list of candidate chemical entities. DNAmod includes manual annotations of available sequencing methods, descriptions of their occurrence in nature, and provides existing and suggested nomenclature. DNAmod enables researchers to rapidly review previous work, select mapping techniques, and track recent developments concerning modified bases of interest.
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The PR2 reference sequence database began as part of the BioMarks project from previous work in the Plankton Group of the Station Biologique of Roscoff. It aims to provide a reference database of carefully annotated 18S rRNA sequences using nine unique taxonomic fields (from domain to species). At present, it contains over 240,000 sequences. Although it focuses on protists, it also contains sequences from metazoa, fungi and plants as well a limited set of 16S sequences from plastids and bacteria. Several metadata fields are available for many sequences, including geo-localisation, whether it originates from a culture or a natural sample, and host type. The annotation of PR2 is performed by experts in each of the taxonomic groups.
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This site is a university repository providing access to the publication output of the institution. The contents of the repository reflect the interests of the institution and are heavily weighted towards applied sciences and technologies. The site offers in addition to the standard searching options, a concept search construction tool. The site interface is in Catalan, Spanish and English.
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