1,094 Data sources

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MedPortal
Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:Institute of Basic Medical Sciences and Peking Union Medical College Hospital, Chinese Academy of Medical Sciences / Peking Union Medical College.
Institute of Basic Medical Sciences and Peking Union Medical College Hospital, Chinese Academy of Medical Sciences / Peking Union Medical College.
MedPortal is a repository for storing Chinese and English ontologies in the biomedical field. Built using the OntoPortal framework, this repository offers ontology search, browsing, sharing, and semantic annotation. It also provides various forms of ontology and terminology reuse through an API.
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CityU Institutional Repository

Institutional Repository China (People's Republic of) Compatibility:Not yet registeredPartners:City University of Hong Kong

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GHDDI Info Sharing Portal
Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:GLOBAL HEALTH DRUG DISCOVERY INSTITUTE Virology, Drug Discovery, Biomedical Science
GLOBAL HEALTH DRUG DISCOVERY INSTITUTE
doi: 10.25504/fairsharing.f34b51
doi: 10.25504/fairsharing.f34b51
GHDDI Info Sharing Portal is the public information sharing portal and data repository for the drug discovery community, initiated by GHDDI. We are making our drug discovery capabilities and resources available at no cost to all researchers who are developing new treatments for COVID-19.
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Type IV Secretion system Resource
Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:SJTU Life Science, DNA sequence, gene model annotation
SJTU
doi: 10.25504/fairsharing.x0dzdt
doi: 10.25504/fairsharing.x0dzdt
A web-based bacterial type IV secretion system resource for type IV secretion systems (T4SSs) and cognate effectors in bacteria.
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International Ocean Discovery Program
Data Repository Korea (Republic of), Japan, United States, India, Germany, Brazil, Australia, European Union, Norway, China (People's Republic of) Compatibility:Not yet registeredPartners:KIGAM, KIGAM, MEXT, NSF, Ministry of Earth Science +15 partners Natural Sciences, Atmospheric Science and Oceanography, Oceanography
KIGAM,
KIGAM,
MEXT,
NSF,
Ministry of Earth Science,
University of Bremen,
CAPES,
ANZIC,
ECORD,
Marum,
IODP,
MOST,
JAMSTEC,
India Ministry of Earth Science,
IODP,
BGR,
CAPES,
CDEX,
IODP-Koordinationsbüro an der Bundesanstalt für Geowissenschaften und Rohstoffe BGR,
ECORD
re3data: r3d100010267
re3data: r3d100010267
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PlantCircRNA
Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:SDAU Plant Ecology, gene
SDAU
doi: 10.25504/fairsharing.73bafe
doi: 10.25504/fairsharing.73bafe
Circular RNAs (circRNAs) represent recently discovered novel regulatory non-coding RNAs. While they are present in many eukaryotes, there has been limited research on plant circRNAs. We developed PlantCircRNA (https://plant.deepbiology.cn/PlantCircRNA/) to fill this gap. The two most important features of PlantCircRNA are (1) it incorporates circRNAs from 94 plant species based on 39,245 RNA-sequencing samples, and (2) it imports the original AtCircDB and CropCircDB databases. We manually curated all circRNAs from published articles, and imported them into the database. Furthermore, we added detailed information of tissue as well as abiotic stresses to the database. To help users understand these circRNAs, the database includes a detection score to measure their consistency and a naming system following the guidelines recently proposed for eukaryotes. Finally, we developed a comprehensive platform for users to visualize, analyze, and download data regarding specific circRNAs. This resource will serve as a home for plant circRNAs and provide the community with unprecedented insights into these mysterious molecule.
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HKU Theses Online

Institutional Repository China (People's Republic of) Compatibility:Not yet registeredPartners:HKU, HKU

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West DC

Institutional Repository China (People's Republic of) Compatibility:Not yet registeredPartners:中国西部环境与生态科学数据中心

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Institute Repository of TianJin Institute of Industrial Biotechnology

Institutional Repository China (People's Republic of) Compatibility:Not yet registeredPartners:TIB, CAS

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Genome Sequence Archive
Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:NGDC, CNCB / BIG, CAS Genomics, Nucleic acid sequence, read
NGDC, CNCB / BIG, CAS
doi: 10.25504/fairsharing.tdhkc6
re3data: r3d100012342
doi: 10.25504/fairsharing.tdhkc6
re3data: r3d100012342
GSA is a data repository specialized for archiving raw sequence reads. It supports data generated from a variety of sequencing platforms ranging from Sanger sequencing machines to single-cell sequencing machines and provides data storing and sharing services free of charge for worldwide scientific communities. In addition to raw sequencing data, GSA also accommodates secondary analyzed files in acceptable formats (like BAM, VCF). Its user-friendly web interfaces simplify data entry and submitted data are roughly organized as two parts, viz., Metadata and File, where the former can be further assorted into BioProject, BioSample, Experiment and Run, and the latter contains raw sequence reads.
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1,094 Data sources

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MedPortal
Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:Institute of Basic Medical Sciences and Peking Union Medical College Hospital, Chinese Academy of Medical Sciences / Peking Union Medical College.
Institute of Basic Medical Sciences and Peking Union Medical College Hospital, Chinese Academy of Medical Sciences / Peking Union Medical College.
MedPortal is a repository for storing Chinese and English ontologies in the biomedical field. Built using the OntoPortal framework, this repository offers ontology search, browsing, sharing, and semantic annotation. It also provides various forms of ontology and terminology reuse through an API.
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CityU Institutional Repository

Institutional Repository China (People's Republic of) Compatibility:Not yet registeredPartners:City University of Hong Kong

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GHDDI Info Sharing Portal
Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:GLOBAL HEALTH DRUG DISCOVERY INSTITUTE Virology, Drug Discovery, Biomedical Science
GLOBAL HEALTH DRUG DISCOVERY INSTITUTE
doi: 10.25504/fairsharing.f34b51
doi: 10.25504/fairsharing.f34b51
GHDDI Info Sharing Portal is the public information sharing portal and data repository for the drug discovery community, initiated by GHDDI. We are making our drug discovery capabilities and resources available at no cost to all researchers who are developing new treatments for COVID-19.
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Type IV Secretion system Resource
Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:SJTU Life Science, DNA sequence, gene model annotation
SJTU
doi: 10.25504/fairsharing.x0dzdt
doi: 10.25504/fairsharing.x0dzdt
A web-based bacterial type IV secretion system resource for type IV secretion systems (T4SSs) and cognate effectors in bacteria.
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International Ocean Discovery Program
Data Repository Korea (Republic of), Japan, United States, India, Germany, Brazil, Australia, European Union, Norway, China (People's Republic of) Compatibility:Not yet registeredPartners:KIGAM, KIGAM, MEXT, NSF, Ministry of Earth Science +15 partners Natural Sciences, Atmospheric Science and Oceanography, Oceanography
KIGAM,
KIGAM,
MEXT,
NSF,
Ministry of Earth Science,
University of Bremen,
CAPES,
ANZIC,
ECORD,
Marum,
IODP,
MOST,
JAMSTEC,
India Ministry of Earth Science,
IODP,
BGR,
CAPES,
CDEX,
IODP-Koordinationsbüro an der Bundesanstalt für Geowissenschaften und Rohstoffe BGR,
ECORD
re3data: r3d100010267
re3data: r3d100010267
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PlantCircRNA
Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:SDAU Plant Ecology, gene
SDAU
doi: 10.25504/fairsharing.73bafe
doi: 10.25504/fairsharing.73bafe
Circular RNAs (circRNAs) represent recently discovered novel regulatory non-coding RNAs. While they are present in many eukaryotes, there has been limited research on plant circRNAs. We developed PlantCircRNA (https://plant.deepbiology.cn/PlantCircRNA/) to fill this gap. The two most important features of PlantCircRNA are (1) it incorporates circRNAs from 94 plant species based on 39,245 RNA-sequencing samples, and (2) it imports the original AtCircDB and CropCircDB databases. We manually curated all circRNAs from published articles, and imported them into the database. Furthermore, we added detailed information of tissue as well as abiotic stresses to the database. To help users understand these circRNAs, the database includes a detection score to measure their consistency and a naming system following the guidelines recently proposed for eukaryotes. Finally, we developed a comprehensive platform for users to visualize, analyze, and download data regarding specific circRNAs. This resource will serve as a home for plant circRNAs and provide the community with unprecedented insights into these mysterious molecule.
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HKU Theses Online

Institutional Repository China (People's Republic of) Compatibility:Not yet registeredPartners:HKU, HKU

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West DC

Institutional Repository China (People's Republic of) Compatibility:Not yet registeredPartners:中国西部环境与生态科学数据中心

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Institute Repository of TianJin Institute of Industrial Biotechnology

Institutional Repository China (People's Republic of) Compatibility:Not yet registeredPartners:TIB, CAS

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Genome Sequence Archive
Data Repository China (People's Republic of) Compatibility:Not yet registeredPartners:NGDC, CNCB / BIG, CAS Genomics, Nucleic acid sequence, read
NGDC, CNCB / BIG, CAS
doi: 10.25504/fairsharing.tdhkc6
re3data: r3d100012342
doi: 10.25504/fairsharing.tdhkc6
re3data: r3d100012342
GSA is a data repository specialized for archiving raw sequence reads. It supports data generated from a variety of sequencing platforms ranging from Sanger sequencing machines to single-cell sequencing machines and provides data storing and sharing services free of charge for worldwide scientific communities. In addition to raw sequencing data, GSA also accommodates secondary analyzed files in acceptable formats (like BAM, VCF). Its user-friendly web interfaces simplify data entry and submitted data are roughly organized as two parts, viz., Metadata and File, where the former can be further assorted into BioProject, BioSample, Experiment and Run, and the latter contains raw sequence reads.
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CN
DZ

MedPortal

CityU Institutional Repository

GHDDI Info Sharing Portal

Type IV Secretion system Resource

International Ocean Discovery Program

PlantCircRNA

HKU Theses Online

West DC

Institute Repository of TianJin Institute of Industrial Biotechnology

Genome Sequence Archive

MedPortal

CityU Institutional Repository

GHDDI Info Sharing Portal

Type IV Secretion system Resource

International Ocean Discovery Program

PlantCircRNA

HKU Theses Online

West DC

Institute Repository of TianJin Institute of Industrial Biotechnology

Genome Sequence Archive

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