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  • SDSN - Greece
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  • Mémoires en Sciences de l'Information et de la Communication

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    Authors: Agier, Lydiane; Basagaña, Xavier; Maitre, Lea; Granum, Berit; +26 Authors

    BACKGROUND: Several single-exposure studies have documented possible effects of environmental factors on lung function, but none has relied on an exposome approach. We aimed to evaluate the association between a broad range of prenatal and postnatal lifestyle and environmental exposures and lung function in children.METHODS: In this analysis, we used data from 1033 mother-child pairs from the European Human Early-Life Exposome (HELIX) cohort (consisting of six existing longitudinal birth cohorts in France, Greece, Lithuania, Norway, Spain, and the UK of children born between 2003 and 2009) for whom a valid spirometry test was recorded for the child. 85 prenatal and 125 postnatal exposures relating to outdoor, indoor, chemical, and lifestyle factors were assessed, and lung function was measured by spirometry in children at age 6-12 years. Two agnostic linear regression methods, a deletion-substitution-addition (DSA) algorithm considering all exposures simultaneously, and an exposome-wide association study (ExWAS) considering exposures independently, were applied to test the association with forced expiratory volume in 1 s percent predicted values (FEV1%). We tested for two-way interaction between exposures and corrected for confounding by co-exposures.FINDINGS: In the 1033 children (median age 8·1 years, IQR 6·5-9·0), mean FEV1% was 98·8% (SD 13·2). In the ExWAS, prenatal perfluorononanoate (p=0·034) and perfluorooctanoate (p=0·030) exposures were associated with lower FEV1%, and inverse distance to nearest road during pregnancy (p=0·030) was associated with higher FEV1%. Nine postnatal exposures were associated with lower FEV1%: copper (p=0·041), ethyl-paraben (p=0·029), five phthalate metabolites (mono-2-ethyl 5-carboxypentyl phthalate [p=0·016], mono-2-ethyl-5-hydroxyhexyl phthalate [p=0·023], mono-2-ethyl-5-oxohexyl phthalate [p=0·0085], mono-4-methyl-7-oxooctyl phthalate [p=0·040], and the sum of di-ethylhexyl phthalate metabolites [p=0·014]), house crowding (p=0·015), and facility density around schools (p=0·027). However, no exposure passed the significance threshold when corrected for multiple testing in ExWAS, and none was selected with the DSA algorithm, including when testing for exposure interactions.INTERPRETATION: Our systematic exposome approach identified several environmental exposures, mainly chemicals, that might be associated with lung function. Reducing exposure to these ubiquitous chemicals could help to prevent the development of chronic respiratory disease.FUNDING: European Community's Seventh Framework Programme (HELIX project).

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    Other literature type . Article . 2019
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    Article . 2019
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    Article . 2019
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      Article . 2019
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    Authors: Rok Novak; Ioannis Petridis; David Kocman; Johanna Amalia Robinson; +17 Authors

    Use of a multi-sensor approach can provide citizens with holistic insights into the air quality of their immediate surroundings and their personal exposure to urban stressors. Our work, as part of the ICARUS H2020 project, which included over 600 participants from seven European cities, discusses the data fusion and harmonization of a diverse set of multi-sensor data streams to provide a comprehensive and understandable report for participants. Harmonizing the data streams identified issues with the sensor devices and protocols, such as non-uniform timestamps, data gaps, difficult data retrieval from commercial devices, and coarse activity data logging. Our process of data fusion and harmonization allowed us to automate visualizations and reports, and consequently provide each participant with a detailed individualized report. Results showed that a key solution was to streamline the code and speed up the process, which necessitated certain compromises in visualizing the data. A thought-out process of data fusion and harmonization of a diverse set of multi-sensor data streams considerably improved the quality and quantity of distilled data that a research participant received. Though automation considerably accelerated the production of the reports, manual and structured double checks are strongly recommended. This work has received funding from the European Union’s Horizon 2020 Programme for Research, Technological Development, and Demonstration, under grant agreement No. 690105 (Integrated Climate forcing and Air Pollution Reduction in Urban Systems (ICARUS)). This work reflects only the authors’ views, and the European Commission is not responsible for any use that may be made of the information it contains. Funding was received from the Young Researchers Program and the P1-0143 program “Cycling of substances in the environment, mass balances, modelling of environmental processes and risk assessment“, both funded by the Slovenian Research Agency. The authors thank RECETOX Research Infrastructure (No. LM2018121) and ACTRIS-CZ Research Infrastructure (No. LM2018122) financed by the Ministry of Education, Youth and Sports and the Operational Programme Research, Development and Innovation (CZ.02.1.01/0.0/0.0/16_013/0001315 and CZ.02.1.01/0.0/0.0/16_013/0001761), as well as the CETOCOEN Excellence Project, supported by the Teaming Action of the EU Horizon 2020 programme (857560) and the Operational Programme Research, Development and Innovation (No. CZ.02.1.01/0.0/0.0/17_043/0009632). Sí

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    Article . 2021
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    Authors: Chust, Guillem; Borja, Angel; Caballero, Ainhoa; Irigoien, Xabier; +7 Authors

    The impacts of global climate change on the Basque coast and the pelagic systems within the southeastern Bay of Biscay are reviewed. Climate projections under greenhouse gas emission scenarios indicate that this area will experience changes in climate throughout the 21st century, including warming of surface air (especially heat wave episodes), intensification of extreme daily rainfall (10%), warming of the upper 100 m of the ocean layer (1.5 to 2.05°C), and sea level rise (SLR; 29 to 49 cm). Observations made in the bay throughout the 20th century for air temperature and mean sea level are in agreement with these projections. Trends in ocean-climatic historical observations within the area, including sea temperature, precipitation, upwelling/downwelling, turbulence and wave climate, are also reviewed. The main impacts on the coast are expected to be from SLR, especially in low-lying areas (mostly urbanised) within estuaries. Sandy beaches are also expected to undergo significant mean shoreline retreats of between 25 and 40% of their width. As the sea level rises, the natural migration of saltmarshes and intertidal seagrasses landward will be constrained, in most cases, by existing anthropogenic fixed boundaries. Empirical relationships between the distribution and dynamics of the long-term biological measures (plankton, primary production, benthos, and fisheries) on the one hand, and ocean-climatic variability on the other, indicate that pelagic and coastal water ecosystems will be affected by ocean warming, increased stratification, shifts in anomaly patterns and streamflow regimes. The largest uncertainties are associated with the lack of down-scaled projections within the bay on ocean circulation, ocean-meteorological indices, wave climate and ocean acidification. Este estudio ha sido financiado por el Departamento de Medio Ambiente, Planificación Territorial, Agricultura y Pesca del Gobierno Vasco (Proyectos K-Egokitzen y EKLIMA21 , del Programa Etortek); así como por el Ministerio de Medio Ambiente y Medio Rural y Marino del Gobierno de España (Proyecto Ref.: 0.39/ SGTB/ 2007/4.1), y el Ministerio de Ciencia e Innovación(Proyecto Ref.: CGL2008-03321). 27 páginas, 13 figuras, 3 tablas. Artículo Open Access. Peer reviewed

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      Article . 2011
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    Authors: Marta Coll; Lynne J. Shannon; Kristin M. Kleisner; M. J. Juan-Jorda; +34 Authors

    IndiSeas (>Indicators for the Seas>) is a collaborative international working group that was established in 2005 to evaluate the status of exploited marine ecosystems using a suite of indicators in a comparative framework. An initial shortlist of seven ecological indicators was selected to quantify the effects of fishing on the broader ecosystem using several criteria (i.e., ecological meaning, sensitivity to fishing, data availability, management objectives and public awareness). The suite comprised: (i) the inverse coefficient of variation of total biomass of surveyed species, (ii) mean fish length in the surveyed community, (iii) mean maximum life span of surveyed fish species, (iv) proportion of predatory fish in the surveyed community, (v) proportion of under and moderately exploited stocks, (vi) total biomass of surveyed species, and (vii) mean trophic level of the landed catch. In line with the Nagoya Strategic Plan of the Convention on Biological Diversity (2011-2020), we extended this suite to emphasize the broader biodiversity and conservation risks in exploited marine ecosystems. We selected a subset of indicators from a list of empirically based candidate biodiversity indicators initially established based on ecological significance to complement the original IndiSeas indicators. The additional selected indicators were: (viii) mean intrinsic vulnerability index of the fish landed catch, (ix) proportion of non-declining exploited species in the surveyed community, (x) catch-based marine trophic index, and (xi) mean trophic level of the surveyed community. Despite the lack of data in some ecosystems, we also selected (xii) mean trophic level of the modelled community, and (xiii) proportion of discards in the fishery as extra indicators. These additional indicators were examined, along with the initial set of IndiSeas ecological indicators, to evaluate whether adding new biodiversity indicators provided useful additional information to refine our understanding of the status evaluation of 29 exploited marine ecosystems. We used state and trend analyses, and we performed correlation, redundancy and multivariate tests. Existing developments in ecosystem-based fisheries management have largely focused on exploited species. Our study, using mostly fisheries independent survey-based indicators, highlights that biodiversity and conservation-based indicators are complementary to ecological indicators of fishing pressure. Thus, they should be used to provide additional information to evaluate the overall impact of fishing on exploited marine ecosystems. © 2015 Elsevier Ltd. All rights reserved We thank the Euroceans IndiSeas Working Group funded by the European Network of Excellence EUR-OCEANS (FP6, Contract N° 511106), the European collaborative project MEECE – Marine Ecosystem Evolution in a Changing Environment (FP7, Contract N° 212085) and IRD (Institute of Research for Development) and IOC/UNESCO. [...] MC was partially funded by the European Commission through the Marie Curie Career Integration Grant Fellowships – PCIG10-GA-2011-303534 – to the BIOWEB project and by the Spanish National Program Ramon y Cajal. LJS was supported through the South African Research Chair Initiative, funded through the South African Department of Science and Technology (DST) and administered by the South African National Research Foundation (NRF). LJS and YS were also funded by the European collaborative project MEECE – Marine Ecosystem Evolution in a Changing Environment – (FP7, Contract N° 212085). KMK was supported by the Northeast Fisheries Science Center and the Nature Conservancy through a grant from the Gordon and Betty Moore Foundation. MJJJ was supported by an EU Marie Curie International Outgoing Fellowship – PIOF-GA-2013-628116. MFB was supported by the Portuguese Oceanic and Atmospheric Institute and the trawl survey data collected under Biological Sampling (PNAB) Program. LJG would like to thank the Joint Research Centre of the European Commission for support. HO was financed by the Estonian Ministry of Education and Research (Grant SF0180005s10). JJH was supported by the Natural Environment Research Council and Department for Environment, Food and Rural Affairs [Grant Number NE/L003279/1, Marine Ecosystems Research Programme]. GIvdM was supported by the Institute of Marine Research, Norway. KT was partially funded by the project PERSEUS (Policy-oriented marine Environmental Research in the Southern EUropean Seas; FP7 Contract N° 287600). MAT was funded by the Spanish Institute of Oceanography (IEO) through a Predoctoral FPI fellowship. KNM was supported by a National Research Council fellowship at the Northwest Fishery Science Center. YJS and MTT were partially supported by the French project EMIBIOS (FRB, Contract No. APP-SCEN-2010-II). Chatham Rise trawl survey data were provided by the Ministry for Primary Industries. CL acknowledges DEVOTES – Development of innovative tools for understanding marine biodiversity and assessing good Environmental Status – EC project (FP7 Grant Agreement 308392) Coll, Marta ... et al.-- 16 pages, 6 figures, 6 tables Peer Reviewed

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    Ecological Indicators
    Article . 2016 . Peer-reviewed
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      Ecological Indicators
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    Authors: Ana, Popovic; Tran, Hai; Anatoly, Tchigvintsev; Mahbod, Hajighasemi; +17 Authors

    AbstractMetagenomics has made accessible an enormous reserve of global biochemical diversity. To tap into this vast resource of novel enzymes, we have screened over one million clones from metagenome DNA libraries derived from sixteen different environments for carboxylesterase activity and identified 714 positive hits. We have validated the esterase activity of 80 selected genes, which belong to 17 different protein families including unknown and cyclase-like proteins. Three metagenomic enzymes exhibited lipase activity, and seven proteins showed polyester depolymerization activity against polylactic acid and polycaprolactone. Detailed biochemical characterization of four new enzymes revealed their substrate preference, whereas their catalytic residues were identified using site-directed mutagenesis. The crystal structure of the metal-ion dependent esterase MGS0169 from the amidohydrolase superfamily revealed a novel active site with a bound unknown ligand. Thus, activity-centered metagenomics has revealed diverse enzymes and novel families of microbial carboxylesterases, whose activity could not have been predicted using bioinformatics tools.

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    Scientific Reports
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    Europe PubMed Central
    Article . 2017
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    CNR ExploRA
    Article . 2017
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      Europe PubMed Central
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    Authors: Rindorf, Anna; Dichmont, Catherine M.; Thorson, James; Charles, Anthony; +19 Authors

    Peer-reviewed. This is a open access article accepted for publication in ICES Journal of Marine Science following peer review. Rindorf, A., Dichmont, C. M., Thorson, J., Charles, A., Clausen, L. W., Degnbol, P., …Reid, D. G. ... Voss, R. (2017). Inclusion of ecological, economic, social, and institutional considerations when setting targets and limits for multispecies fisheries. ICES Journal of Marine Science: Journal Du Conseil. https://doi.org/10.1093/icesjms/fsw226 is available online at: https://academic.oup.com/icesjms/article/74/2/453/2962394 doi:10.1093/icesjms/fsw226 Targets and limits for long-term management are used in fisheries advice to operationalize the way management reflects societal priorities on ecological, economic, social and institutional aspects. This study reflects on the available published literature as well as new research presented at the international ICES/Myfish symposium on targets and limits for long term fisheries management. We examine the inclusion of ecological, economic, social and institutional objectives in fisheries management, with the aim of progressing towards including all four objectives when setting management targets or limits, or both, for multispecies fisheries. The topics covered include ecological, economic, social and governance objectives in fisheries management, consistent approaches to management, uncertainty and variability, and fisheries governance. We end by identifying ten ways to more effectively include multiple objectives in setting targets and limits in ecosystem based fisheries management.

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    ICES Journal of Marine Science; Research@WUR; Aalborg University Research Portal
    Other literature type . Article . 2017 . Peer-reviewed
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    Authors: Sutcliffe, Laura M. E.; Batáry, Péter; Kormann, Urs; Baldi, Andras; +39 Authors

    A large proportion of European biodiversity today depends on habitat provided by low‐intensity farming practices, yet this resource is declining as European agriculture intensifies. Within the European Union, particularly the central and eastern new member states have retained relatively large areas of species‐rich farmland, but despite increased investment in nature conservation here in recent years, farmland biodiversity trends appear to be worsening. Although the high biodiversity value of Central and Eastern European farmland has long been reported, the amount of research in the international literature focused on farmland biodiversity in this region remains comparatively tiny, and measures within the EU Common Agricultural Policy are relatively poorly adapted to support it. In this opinion study, we argue that, 10 years after the accession of the first eastern EU new member states, the continued under‐representation of the low‐intensity farmland in Central and Eastern Europe in the international literature and EU policy is impeding the development of sound, evidence‐based conservation interventions. The biodiversity benefits for Europe of existing low‐intensity farmland, particularly in the central and eastern states, should be harnessed before they are lost. Instead of waiting for species‐rich farmland to further decline, targeted research and monitoring to create locally appropriate conservation strategies for these habitats is needed now. Volkswagen Foundation

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    https://doi.org/10.7892/boris....
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    Authors: Riikka Paloniemi; Evangelia Apostolopoulou; Eeva Primmer; Malgorzata Grodzinska-Jurcak; +9 Authors

    International audience; One of the core challenges of biodiversity conservation is to better understand the interconnectedness and interactions of scales in ecological and governance processes. hese interrelationships constitute not only a complex analytical challenge but they also open up a channel for deliberative discussions and knowledge exchange between and among various societal actors which may themselves be operating at various scales, such as policy makers, land use planners, members of NGOs, and researchers. In this paper, we discuss and integrate the perspectives of various disciplines academics and stakeholders who participated in a workshop on scales of European biodiversity governance organised in Brussels in the autumn of 2010. he 23 participants represented various governmental agencies and NGOs from the European, national, and sub-national levels. he data from the focus group discussions of the workshop were analysed using qualitative content analysis. he core scale-related challenges of biodiversity policy identiied by the participants were cross-level and cross-sector limitations as well as ecological, social and social-ecological complexities that potentially lead to a variety of scale-related mismatches. As ways to address these challenges the participants highlighted innovations, and an aim to develop new interdisciplinary approaches to support the processes aiming to solve current scale challenges.

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    Nature Conservation
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    Nature Conservation
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    Authors: Magnoni, Leonardo J.; Novais, Sara C.; Eding, Ep; Leguen, Isabelle; +5 Authors

    The aquatic metabolic unit used in this study was cofounded by The Netherlands Organization for Scientific Research (code 805-34.025). Currently it is part of a large-scale EU research facility program. The study was funded by the EU-FP7 project AQUAEXCEL (262336). LM is currently supported by a Fundação para a Ciência e a Tecnologia (FCT) research position (IF/01314/2014/CP1231/CT0001) from Portugal. This study had also the support of FCT through strategic projects UID/Multi/04423/2019 and UID/MAR/04292/2013 granted to CIIMAR and MARE, respectively. SN has support from FCT grant (SFRH/BPD/94500/2013). This work was also supported by the Integrated Programme of SR&TD “Smart Valorization of Endogenous Marine Biological Resources Under a Changing Climate” (reference Centro01-0145-FEDER-000018), co-funded by Centro 2020 program, Portugal 2020, European Union, through the European Regional Development Fund. In aquaculture, fish may be exposed to sub-optimal rearing conditions, which generate a stress response if full adaptation is not displayed. However, our current knowledge of several coexisting factors that may give rise to a stress response is limited, in particular when both chronic and acute stressors are involved. This study investigated changes in metabolic parameters, oxidative stress and innate immune markers in a rainbow trout (Oncorhynchus mykiss) isogenic line exposed to a combination of dietary (electrolyteimbalanced diet, DEB 700 mEq Kg−1 ) and environmental (hypoxia, 4.5 mg O2 L −1 ) challenges and their respective controls (electrolyte-balanced diet, DEB 200 mEq Kg−1 and normoxia, 7.9 or mg O2 L −1 ) for 49 days. At the end of this period, fish were sampled or subjected to an acute stressor (2 min of handling/confinement) and then sampled. Feeding trout an electrolyte-imbalanced diet produced a reduction in blood pH, as well as increases in cortisol levels, hepato-somatic index (HSI) and total energy content in the liver. The ratio between the lactate dehydrogenase (LDH) and isocitrate dehydrogenase (IDH) activities decreased in the liver of trout fed the DEB 700 diet, but increased in the heart, suggesting a different modulation of metabolic capacity by the dietary challenge. Several markers of oxidative stress in the liver of trout, mainly related to the glutathione antioxidant system, were altered when fed the electrolyteimbalanced diet. The dietary challenge was also associated with a decrease in the alternative complement pathway activity (ACH50) in plasma, suggesting an impaired innate immune status in that group. Trout subjected to the acute stressor displayed reduced blood pH values, higher plasma cortisol levels as well as increased levels of metabolic markers associated with oxidative stress in the liver. An interaction between diet and acute stressor was detected for oxidative stress markers in the liver of trout, showing that the chronic electrolyte-imbalance impairs the response of rainbow trout to handling/confinement. However, trout reared under chronic hypoxia only displayed changes in parameters related to energy use in both liver and heart. Taken together, these results suggest that trout displays an adaptative response to chronic hypoxia. Conversely, the dietary challenge profoundly affected fish homeostasis, resulting in an impaired physiological response leading to stress, which then placed constraints on a subsequent acute challenge. info:eu-repo/semantics/publishedVersion

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    Europe PubMed Central
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