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description Publicationkeyboard_double_arrow_right Article 2022 France, Italy, France, FranceWiley EC | SUFISAEC| SUFISAPaolo Prosperi; James Kirwan; Damian Maye; Emi Tsakalou; George Vlahos; Fabio Bartolini; Daniele Vergamini; Gianluca Brunori;doi: 10.1111/soru.12362
AbstractEuropean small‐scale fisheries are confronted with several challenges, notably a decrease in the number of people engaged in capture fishing, growing competition from less expensive extra‐European Union markets, rising operational costs, strict regulations and the depletion of fishing stocks. Many small‐scale fishers must adapt to change to maintain or increase their income using different business strategies. In this respect, we argue that new and diversified institutional arrangements combined with building social capital can help reach long‐term economic sustainability for small‐scale fisheries businesses, as well as the social‐ecological resilience of coastal areas. In order to understand and analyse the multiplicity of strategies applied by small‐scale fishers–including expansion towards non–productivist activities, this article examines the role of new institutional arrangements based on small‐scale, traditional, quality‐orientated, multifunctional business strategies and non‐fishing activities. Using a case‐study approach, we analyse–in three different European fishery contexts (Greece, Italy and the UK)–how the interplay between building adaptive arrangements and the creation of social capital in selected small‐scale fisheries provides relevant prerequisites for resilience.
CORE (RIOXX-UK Aggre... arrow_drop_down HAL Descartes; HAL-IRDArticle . 2022add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1111/soru.12362&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu3 citations 3 popularity Top 10% influence Average impulse Average Powered by BIP!
visibility 20visibility views 20 download downloads 3 Powered bymore_vert CORE (RIOXX-UK Aggre... arrow_drop_down HAL Descartes; HAL-IRDArticle . 2022add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1111/soru.12362&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2021 Spain, France, FranceProceedings of the National Academy of Sciences EC | AQUAEXCELEC| AQUAEXCELBenjamin Geffroy; Mathieu Besson; Núria Sánchez-Baizán; Frederic Clota; Alexander Goikoetxea; Bastien Sadoul; François Ruelle; Marie-Odile Blanc; Hugues Parrinello; Sophie Hermet; Eva Blondeau-Bidet; Marine Pratlong; Francesc Piferrer; Marc Vandeputte; François Allal;In most animals, sex determination occurs at conception, when sex chromosomes are segregated following Mendelian laws. However, in multiple reptiles and fishes, this genetic sex can be overridden by external factors after fertilization or birth. In some species, the genetic sex may also be governed by multiple genes, further limiting our understanding of sex determination in such species. We used the European sea bass (Dicentrarchus labrax) as a model and combined genomic (using a single nucleotide polymorphism chip) and transcriptomic (RNA-Sequencing) approaches to thoroughly depict this polygenic sex determination system and its interaction with temperature. We estimated genetic sex tendency (eGST), defined as the estimated genetic liability to become a given sex under a liability threshold model for sex determination, which accurately predicts the future phenotypic sex. We found evidence that energetic pathways, concerning the regulation of lipids and glucose, are involved in sex determination and could explain why females tend to exhibit higher energy levels and improved growth compared to males. Besides, early exposure to high-temperature up-regulated sox3, followed by sox9a in individuals with intermediate eGST, but not in individuals showing highly female-biased eGST, providing the most parsimonious explanation for temperature-induced masculinization. This gonadal state was maintained likely by DNA methylation and the up-regulation of several genes involved in histone modifications, including jmjd1c. Overall, we describe a sex determination system resulting from continuous genetic and environmental influences in an animal. Our results provide significant progress in our understanding of the mechanisms underlying temperature-induced masculinization in fish 12 pages, 6 figures, supporting information online at https://www.pnas.org/lookup/suppl/doi:10.1073/pnas.2112660118/-/DCSupplemental.-- Data Availability: RNA-Seq and .xls tables data have been deposited in a publicly accessible database: SEXTAN (https://sextant.ifremer.fr/record/5cb1485f-385e-46e9-9cc1-4b4d77802183/). All other study data are included in the article and/or supporting information The study was supported by the European Maritime and Fisheries Fund (3S, Seabass Sex and Stress, Grant No. 4320175237) allocated to B.G. Production of the fish benefited from AQUAEXCEL2020 Transnational access grant “Transsexbass” to F.P. and M.V. Research at the F.P. laboratory was supported by Spanish Ministry of Science Grant No. PID2019-108888RB-I00. With the institutional support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S) Peer reviewed
Proceedings of the N... arrow_drop_down ArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of IfremerRecolector de Ciencia Abierta, RECOLECTA; DIGITAL.CSICArticle . 2021add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1073/pnas.2112660118&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu16 citations 16 popularity Top 10% influence Average impulse Top 10% Powered by BIP!
visibility 40visibility views 40 download downloads 255 Powered bymore_vert Proceedings of the N... arrow_drop_down ArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of IfremerRecolector de Ciencia Abierta, RECOLECTA; DIGITAL.CSICArticle . 2021add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1073/pnas.2112660118&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2021 France, Switzerland, France, France, FranceSpringer Science and Business Media LLC ANR | BITMAP, EC | ERA-PLANET, EC | MERCURY ISOTOPES +4 projectsANR| BITMAP ,EC| ERA-PLANET ,EC| MERCURY ISOTOPES ,SNSF| Seasonal impact of vegetation on atmospheric elemental mercury dry deposition ,ANR| GEOVIDE ,EC| MEROXRE ,ANR| MERTOXAuthors: Martin Jiskra; Lars-Eric Heimbürger-Boavida; Marie-Maëlle Desgranges; Mariia V. Petrova; +7 AuthorsMartin Jiskra; Lars-Eric Heimbürger-Boavida; Marie-Maëlle Desgranges; Mariia V. Petrova; Aurélie Dufour; Beatriz Ferreira-Araujo; Jérémy Masbou; Jérôme Chmeleff; Melilotus Thyssen; David Point; Jeroen E. Sonke;Human exposure to toxic mercury (Hg) is dominated by the consumption of seafood1,2. Earth system models suggest that Hg in marine ecosystems is supplied by atmospheric wet and dry Hg(ii) deposition, with a three times smaller contribution from gaseous Hg(0) uptake3,4. Observations of marine Hg(ii) deposition and Hg(0) gas exchange are sparse, however5, leaving the suggested importance of Hg(ii) deposition6 ill-constrained. Here we present the first Hg stable isotope measurements of total Hg (tHg) in surface and deep Atlantic and Mediterranean seawater and use them to quantify atmospheric Hg deposition pathways. We observe overall similar tHg isotope compositions, with median Δ200Hg signatures of 0.02‰, lying in between atmospheric Hg(0) and Hg(ii) deposition end-members. We use a Δ200Hg isotope mass balance to estimate that seawater tHg can be explained by the mixing of 42% (median; interquartile range, 24–50%) atmospheric Hg(ii) gross deposition and 58% (50–76%) Hg(0) gross uptake. We measure and compile additional, global marine Hg isotope data including particulate Hg, sediments and biota and observe a latitudinal Δ200Hg gradient that indicates larger ocean Hg(0) uptake at high latitudes. Our findings suggest that global atmospheric Hg(0) uptake by the oceans is equal to Hg(ii) deposition, which has implications for our understanding of atmospheric Hg dispersal and marine ecosystem recovery. Mercury deposition pathways from the atmosphere to the ocean remain uncertain, but mercury stable isotope measurements from the Atlantic and Mediterranean show that ocean uptake of gaseous elemental mercury is more important than previously thought.
ArchiMer - Instituti... arrow_drop_down ArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of Ifremeradd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1038/s41586-021-03859-8&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu75 citations 75 popularity Top 1% influence Top 10% impulse Top 1% Powered by BIP!
more_vert ArchiMer - Instituti... arrow_drop_down ArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of Ifremeradd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1038/s41586-021-03859-8&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2021 France, United KingdomElsevier BV EC | FISHBOOSTEC| FISHBOOSTJinfeng Zhao; Martin Prchal; Antti Kause; Marc Vandeputte; David Gela; Hana Kocour Kroupova; Veronika Piackova; Pavel Šauer; Christoph Steinbach; Jean-Michel Allamellou; Christos Palaiokostas; Ross D. Houston; Martin Kocour;International audience; In temperate zones, energy reserves of fish are closely related to survival during the first winter of their life. In this study, the genetic and phenotypic background of the accumulation, mobilization and utilization of energy reserves was investigated in Amur mirror carp. To achieve this, the role of traits related to energy reserves on fish performance during the first winter and further periods of rearing was investigated. The experimental stock was established by four full-factorial matings of 5 dams and 10 sires to generate up to 200 full-sibling families. The offspring were sampled before and after the first winter rearing period. Seasonal variation in direct and indirect measures of energy status was examined using Fulton's condition factor (FC), hepato-somatic index (HSI), visceral index (VSI_NO), glycogen, fat and protein in hepatopancreas (HP) and muscle fat content. Other performance traits were also recorded (weight, resistance to koi herpesvirus disease). All traits related to energy reserves, except HP protein, were significantly lower after the first winter. Overall, HP glycogen and fat from muscle, HP and viscera were mobilized during winter. However, genetic correlations between same traits recorded in autumn and spring were lower than 0.8 for most of the traits, implying that not all families responded to overwintering in a similar manner. Heritability also differed before and after the first winter. Before the first winter, all traits had low to medium heritability (0.05-0.35), but after the winter the same traits were moderately or highly heritable (0.22-0.58). Interestingly, HP glycogen traits, unlike HP fat and HP protein, and HSI recorded in yearlings were positively genetically correlated with survival during the third growing season (rg = 0.49-0.72). This study provides the first evidence of a genetically based strategy for energy mobilization related to overwintering of common carp. Measuring of FC and HSI could be used to monitor the energy status of common carp and to provide a supplementary tool for management of carp stocks.
Edinburgh Research E... arrow_drop_down ArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of Ifremeradd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.aquaculture.2021.736799&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu5 citations 5 popularity Top 10% influence Average impulse Average Powered by BIP!
more_vert Edinburgh Research E... arrow_drop_down ArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of Ifremeradd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.aquaculture.2021.736799&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2021 France, France, United KingdomAmerican Geophysical Union (AGU) UKRI | Blowing Snow and Sea Ice ..., EC | ERA-PLANET, UKRI | Blowing snow and sea ice ...UKRI| Blowing Snow and Sea Ice Surfaces as a Source of Polar Sea Salt Aerosol (BLOWSEA) ,EC| ERA-PLANET ,UKRI| Blowing snow and sea ice surfaces as a source of polar sea salt aerosol (BLOWSEA)Louis Marelle; Jennie L. Thomas; Shaddy Ahmed; Katie Tuite; Jochen Stutz; Aurélien Dommergue; William R. Simpson; Markus M. Frey; Foteini Baladima;Abstract Elevated concentrations of atmospheric bromine are known to cause ozone depletion in the Arctic, which is most frequently observed during springtime. We implement a detailed description of bromine and chlorine chemistry within the WRF‐Chem 4.1.1 model, and two different descriptions of Arctic bromine activation: (1) heterogeneous chemistry on surface snow on sea ice, triggered by ozone deposition to snow (Toyota et al., 2011 https://doi.org/10.5194/acp-11-3949-2011), and (2) heterogeneous reactions on sea salt aerosols emitted through the sublimation of lofted blowing snow (Yang et al., 2008, https://doi.org/10.1029/2008gl034536). In both mechanisms, bromine activation is sustained by heterogeneous reactions on aerosols and surface snow. Simulations for spring 2012 covering the entire Arctic reproduce frequent and widespread ozone depletion events, and comparisons with observations of ozone show that these developments significantly improve model predictions during the Arctic spring. Simulations show that ozone depletion events can be initiated by both surface snow on sea ice, or by aerosols that originate from blowing snow. On a regional scale, in spring 2012, snow on sea ice dominates halogen activation and ozone depletion at the surface. During this period, blowing snow is a major source of Arctic sea salt aerosols but only triggers a few depletion events. Key Points Halogen activation and its role in Arctic surface ozone depletion events (ODEs) is modeled using WRF‐ChemTwo halogen activation mechanisms are implemented (1) surface snow and (2) blowing snowA spring 2012 case study indicates that both mechanisms can trigger near‐surface ODEs, but that surface snow dominates
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1029/2020ms002391&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu8 citations 8 popularity Top 10% influence Average impulse Top 10% Powered by BIP!
visibility 2visibility views 2 download downloads 28 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1029/2020ms002391&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2021 Spain, France, ItalyWiley EC | MEDSEAEC| MEDSEAViviana Peña; Ben P. Harvey; Sylvain Agostini; Lucia Porzio; Marco Milazzo; Paulo Antunes Horta; Line Le Gall; Jason M. Hall-Spencer;AbstractCalcified coralline algae are ecologically important in rocky habitats in the marine photic zone worldwide and there is growing concern that ocean acidification will severely impact them. Laboratory studies of these algae in simulated ocean acidification conditions have revealed wide variability in growth, photosynthesis and calcification responses, making it difficult to assess their future biodiversity, abundance and contribution to ecosystem function. Here, we apply molecular systematic tools to assess the impact of natural gradients in seawater carbonate chemistry on the biodiversity of coralline algae in the Mediterranean and the NW Pacific, link this to their evolutionary history and evaluate their potential future biodiversity and abundance. We found a decrease in the taxonomic diversity of coralline algae with increasing acidification with more than half of the species lost in high pCO2 conditions. Sporolithales is the oldest order (Lower Cretaceous) and diversified when ocean chemistry favoured low Mg calcite deposition; it is less diverse today and was the most sensitive to ocean acidification. Corallinales were also reduced in cover and diversity but several species survived at high pCO2; it is the most recent order of coralline algae and originated when ocean chemistry favoured aragonite and high Mg calcite deposition. The sharp decline in cover and thickness of coralline algal carbonate deposits at high pCO2 highlighted their lower fitness in response to ocean acidification. Reductions in CO2 emissions are needed to limit the risk of losing coralline algal diversity.
Global Change Biolog... arrow_drop_down Repositorio da Universidade da CoruñaArticle . 2021Data sources: Repositorio da Universidade da CoruñaRecolector de Ciencia Abierta, RECOLECTAArticle . 2021Data sources: Recolector de Ciencia Abierta, RECOLECTAadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1111/gcb.15757&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu20 citations 20 popularity Top 10% influence Average impulse Top 10% Powered by BIP!
more_vert Global Change Biolog... arrow_drop_down Repositorio da Universidade da CoruñaArticle . 2021Data sources: Repositorio da Universidade da CoruñaRecolector de Ciencia Abierta, RECOLECTAArticle . 2021Data sources: Recolector de Ciencia Abierta, RECOLECTAadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1111/gcb.15757&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Other literature type , Article 2021 FranceElsevier BV EC | ERA4CSEC| ERA4CSSylvain Gaillard; Damien Réveillon; Charline Danthu; Fabienne Hervé; Manoella Sibat; Liliane Carpentier; Hélène Hégaret; Véronique Séchet; Philipp Hess;pmid: 34456027
International audience; Dinophysis is the main dinoflagellate genus responsible for diarrheic shellfish poisoning (DSP) in human consumers of filter feeding bivalves contaminated with lipophilic diarrheic toxins. Species of this genus have a worldwide distribution driven by environmental conditions (temperature, irradiance, salinity, nutrients etc.), and these factors are sensitive to climate change. The D. acuminata-complex may contain several species, including D. sacculus. The latter has been found in estuaries and semi-enclosed areas, water bodies subjected to quick salinity variations and its natural repartition suggests some tolerance to salinity changes. However, the response of strains of D. acuminata-complex (D. cf. sacculus) subjected to salinity stress and the underlying mechanisms have never been studied in the laboratory. Here, a 24 h hypoosmotic (25) and hyperosmotic (42) stress was performed in vitro in a metabolomic study carried out with three cultivated strains of D. cf. sacculus isolated from the French Atlantic and Mediterranean coasts. Growth rate, biovolume and osmolyte (proline, glycine betaine and dimethylsulfoniopropionate (DMSP)) and toxin contents were measured. Osmolyte contents were higher at the highest salinity, but only a significant increase in glycine betaine was observed between the control (35) and the hyperosmotic treatment. Metabolomics revealed significant and strain-dependent differences in metabolite profiles for different salinities. These results, as well as the absence of effects on growth rate, biovolume, okadaic acid (OA) and pectenotoxin (PTXs) cellular contents, suggest that the D. cf. sacculus strains studied are highly tolerant to salinity variations.
ArchiMer - Instituti... arrow_drop_down ArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of Ifremeradd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.hal.2021.102009&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu6 citations 6 popularity Top 10% influence Average impulse Average Powered by BIP!
more_vert ArchiMer - Instituti... arrow_drop_down ArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of Ifremeradd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.hal.2021.102009&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2021 France, Norway, United Kingdom, ItalyElsevier BV EC | MedAID, EC | PerformFISHEC| MedAID ,EC| PerformFISHCarolina Peñaloza; Tereza Manousaki; Rafaella Franch; Alexandros Tsakogiannis; Anna K. Sonesson; Muhammad Luqman Aslam; François Allal; Luca Bargelloni; Ross D. Houston; Costas S. Tsigenopoulos;pmc: PMC8276775
pmid: 33933591
SNP arrays are powerful tools for high-resolution studies of the genetic basis of complex traits, facilitating both selective breeding and population genomic research. The European seabass (Dicentrarchus labrax) and the gilthead seabream (Sparus aurata) are the two most important fish species for Mediterranean aquaculture. While selective breeding programmes increasingly underpin stock supply for this industry, genomic selection is not yet widespread. Genomic selection has major potential to expedite genetic gain, particularly for traits practically impossible to measure on selection candidates, such as disease resistance and fillet characteristics. The aim of our study was to design a combined-species 60 K SNP array for European seabass and gilthead seabream, and to test its performance on farmed and wild populations from numerous locations throughout the species range. To achieve this, high coverage Illumina whole-genome sequencing of pooled samples was performed for 24 populations of European seabass and 27 populations of gilthead seabream. This resulted in a database of ~20 million SNPs per species, which were then filtered to identify high-quality variants and create the final set for the development of the ‘MedFish’ SNP array. The array was then tested by genotyping a subset of the discovery populations, highlighting a high conversion rate to functioning polymorphic assays on the array (92% in seabass; 89% in seabream) and repeatability (99.4–99.7%). The platform interrogates ~30 K markers in each species, includes features such as SNPs previously shown to be associated with performance traits, and is enriched for SNPs predicted to have high functional effects on proteins. The array was demonstrated to be effective at detecting population structure across a wide range of fish populations from diverse geographical origins, and to examine the extent of haplotype sharing among Mediterranean farmed fish populations. In conclusion, the new MedFish array enables efficient and accurate high-throughput genotyping for genome-wide distributed SNPs for each fish species, and will facilitate stock management, population genomics approaches, and acceleration of selective breeding through genomic selection. Highlights • Α 60 K SNP array (MedFish) was designed for European seabass and gilthead seabream from wild and domesticated populations. • The array exhibited a high conversion rate (92% in seabass; 89% in seabream) and repeatability (99.4 and 99.7%). • The MedFish array is expected to facilitate stock management and acceleration of selective breeding via genomic selection.
Europe PubMed Centra... arrow_drop_down GenomicsOther literature type . Article . 2021ArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of Ifremeradd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.ygeno.2021.04.038&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu25 citations 25 popularity Top 10% influence Average impulse Top 10% Powered by BIP!
visibility 8visibility views 8 download downloads 10 Powered bymore_vert Europe PubMed Centra... arrow_drop_down GenomicsOther literature type . Article . 2021ArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of Ifremeradd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2021 Spain, FranceFrontiers Media SA EC | MERCESEC| MERCESAuthors: Carlota R. Gazulla; Carlota R. Gazulla; Paula López-Sendino; Agostinho Antunes; +10 AuthorsCarlota R. Gazulla; Carlota R. Gazulla; Paula López-Sendino; Agostinho Antunes; Agostinho Antunes; Didier Aurelle; Didier Aurelle; Ignasi Montero-Serra; Jean-Marie Dominici; Cristina Linares; Joaquim Garrabou; Joaquim Garrabou; Jean-Baptiste Ledoux; Jean-Baptiste Ledoux;handle: 10261/248118
Marine protected areas (MPAs) are one of the most efficient conservation tools to buffer marine biodiversity loss induced by human activities. Beside effective enforcement, an accurate understanding of the eco-evolutionary processes underlying the patterns of biodiversity is needed to reap the benefits of management policies. In this context, integrating population genetics with demographic data, the demo-genetic approach, is particularly relevant to shift from a “species-based pattern” toward an “eco-evolutionary-based processes” conservation. Here, targeting a key species in the Mediterranean coralligenous, the red coral, Corallium rubrum, in an emblematic Mediterranean MPA, the “Réserve Naturelle de Scandola” (France), we applied demo-genetic approaches at two contrasted spatial scales, among populations and within one population, to (i) infer the demographic connectivity among populations in the metapopulation network and (ii) shed new light on the genetic connectivity and on the demographic transitions underlying the dynamics of a near-pristine population. Integrating different spatial and temporal scales, we demonstrated (i) an apparent temporal stability in the pattern of genetic diversity and structure in the MPA in spite of a dramatic demographic decline and (ii) contrasted levels of genetic isolation but substantial demographic connectivity among populations. Focusing on the near-pristine population, we complemented the characterization of red coral demographic connectivity suggesting (iii) temporal variability and (iv) the occurrence of collective dispersal. In addition, we demonstrated (v) contrasted patterns of spatial genetic structure (SGS), depending on the considered stage-class (adults vs. juveniles), in the near-pristine population. This last result points out that the overall SGS resulted from a restricted dispersal of locally produced juveniles (SGS among adults and juveniles) combined to mortality during early life stages (decrease of SGS from juveniles to adults). Demonstrating the occurrence of two management units and the importance of two populations (CAVB and ALE) for the network of connectivity, we made recommendations for the management of the Réserve Naturelle de Scandola. Besides, we contributed to the implementation of scientifically driven restoration protocols in red coral by providing estimates for the size, density, and distances among patches of transplanted colonies This research was supported by the Strategic Funding UIDB/04423/2020 and UIDP/04423/2020 through national funds provided by the FCT – Foundation for Science and Technology and European Regional Development Fund (ERDF), in the framework of the program PT2020, the Spanish MINECO (CGL2012-32194), the TOTAL Foundation PERFECT project, the MIMOSA project funded by the foundation Prince Albert II de Monaco, and the European Union’s Horizon 2020 Research and Innovation Program under grant agreement N° 689518 (MERCES). [...] J-BL was funded by an assistant researcher contract framework of the RD Unit—UID/Multi/04423/2019 – Interdisciplinary Centre of Marine and Environmental Research—financed by the European Regional Development Fund (ERDF) through COMPETE2020 – Operational Program for Competitiveness and Internationalization (POCI) and national funds through FCT/MCTES (PIDDAC). Genotyping was performed at the Genome Transcriptome Facility of Bordeaux (grants from the Conseil Régional d’Aquitaine n 20030304002FA and 20040305003FA, from the European Union FEDER n 2003227 and from Investissements d’Avenir ANR-10-EQPX-16-01). This work acknowledges the “Severo Ochoa Centre of Excellence” accreditation (CEX2019-000928-S). We acknowledge support of the publication fee by the CSIC Open Access Publication Support Initiative through its Unit of Information Resources for Research (URICI) 15 pages, 3 figures, 2 tables, supplementary material https://www.frontiersin.org/articles/10.3389/fmars.2021.633057/full#supplementary-material.-- Data Availability Statement:The original contributions presented in the study are included in the article/Supplementary Material, further inquiries can be directed to the corresponding author/s Peer reviewed
Frontiers in Marine ... arrow_drop_down Frontiers in Marine ScienceArticle . 2021Recolector de Ciencia Abierta, RECOLECTA; DIGITAL.CSICArticle . 2021add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.eu5 citations 5 popularity Top 10% influence Average impulse Average Powered by BIP!
visibility 21visibility views 21 download downloads 73 Powered bymore_vert Frontiers in Marine ... arrow_drop_down Frontiers in Marine ScienceArticle . 2021Recolector de Ciencia Abierta, RECOLECTA; DIGITAL.CSICArticle . 2021add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2021 FranceElsevier BV EC | MERCESEC| MERCESJulien Marticorena; Marjolaine Matabos; Eva Ramirez-Llodra; Cecile Cathalot; Agathe Laes-Huon; R. Leroux; Stéphane Hourdez; J.-P. Donval; Jozée Sarrazin;pmid: 33992969
So far, the natural recovery of vent communities at large scales has only been evaluated at fast spreading centres, by monitoring faunal recolonisation after volcanic eruptions. However, at slow spreading ridges, opportunities to observe natural disturbances are rare, the overall hydrothermal system being more stable. In this study, we implemented a novel experimental approach by inducing a small-scale disturbance to assess the recovery potential of vent communities along the slow-spreading northern Mid-Atlantic Ridge (nMAR). We followed the recovery patterns of thirteen Bathymodiolus azoricus mussel assemblages colonising an active vent edifice at the Lucky Strike vent field, in relation to environmental conditions and assessed the role of biotic interactions in recolonisation dynamics. Within 2 years after the disturbance, almost all taxonomic richness had recovered, with the exception of a few low occurrence species. However, we observed only a partial recovery of faunal densities and a major change in faunal composition characterised by an increase in abundance of gastropod species, which are hypothesised to be the pioneer colonists of these habitats. Although not significant, our results suggest a potential role of mobile predators in early-colonisation stages. A model of post-disturbance succession for nMAR vent communities from habitat opening to climax assemblages is proposed, also highlighting numerous knowledge gaps. This type of experimental approach, combined with dispersal and connectivity analyses, will contribute to fully assess the resilience of active vent communities after a major disturbance, especially along slow spreading centres targeted for seafloor massive sulphide extraction.
Marine Environmental... arrow_drop_down ArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of Ifremeradd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.marenvres.2021.105316&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu3 citations 3 popularity Top 10% influence Average impulse Average Powered by BIP!
more_vert Marine Environmental... arrow_drop_down ArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of Ifremeradd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.marenvres.2021.105316&type=result"></script>'); --> </script>
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description Publicationkeyboard_double_arrow_right Article 2022 France, Italy, France, FranceWiley EC | SUFISAEC| SUFISAPaolo Prosperi; James Kirwan; Damian Maye; Emi Tsakalou; George Vlahos; Fabio Bartolini; Daniele Vergamini; Gianluca Brunori;doi: 10.1111/soru.12362
AbstractEuropean small‐scale fisheries are confronted with several challenges, notably a decrease in the number of people engaged in capture fishing, growing competition from less expensive extra‐European Union markets, rising operational costs, strict regulations and the depletion of fishing stocks. Many small‐scale fishers must adapt to change to maintain or increase their income using different business strategies. In this respect, we argue that new and diversified institutional arrangements combined with building social capital can help reach long‐term economic sustainability for small‐scale fisheries businesses, as well as the social‐ecological resilience of coastal areas. In order to understand and analyse the multiplicity of strategies applied by small‐scale fishers–including expansion towards non–productivist activities, this article examines the role of new institutional arrangements based on small‐scale, traditional, quality‐orientated, multifunctional business strategies and non‐fishing activities. Using a case‐study approach, we analyse–in three different European fishery contexts (Greece, Italy and the UK)–how the interplay between building adaptive arrangements and the creation of social capital in selected small‐scale fisheries provides relevant prerequisites for resilience.
CORE (RIOXX-UK Aggre... arrow_drop_down