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  • SDSN - Greece
  • 2018-2022
  • Publications
  • ArchiMer - Institutional Archive of...

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Michele Gourmelon; Amine M. Boukerb; Nesrine Nabi; Sangeeta Banerji; +9 Authors

    Members of the Campylobacter lari group are causative agents of human gastroenteritis and are frequently found in shellfish, marine waters, shorebirds, and marine mammals. Within a One Health context, we used comparative genomics to characterize isolates from a diverse range of sources and geographical locations within Europe and Australia and assess possible transmission of food, animal, and environmental isolates to the human host. A total of 158 C. lari isolates from Australia, Denmark, France, and Germany, which included 82 isolates from human stool and blood, 12 from food, 14 from domestic animal, 19 from waterbirds, and 31 from the environment were analyzed. Genome-wide analysis of the genetic diversity, virulence, and antimicrobial resistance (AMR) traits was carried-out. Most of the isolates belonged to C. lari subsp. lari (Cll; 98, 62.0%), while C. lari subsp. concheus and C. lari urease-positive thermotolerant Campylobacter (UPTC) were represented by 12 (7.6%) and 15 (9.5%) isolates, respectively. Furthermore, 33 (20.9%) isolates were not assigned a subspecies and were thus attributed to distant Campylobacter spp. clades. Whole-genome sequence-derived multilocus sequence typing (MLST) and core-genome MLST (cgMLST) analyses revealed a high genetic diversity with 97 sequence types (STs), including 60 novel STs and 14 cgMLST clusters (≤10 allele differences), respectively. The most prevalent STs were ST-21, ST-70, ST-24, and ST-58 (accounting for 13.3%, 4.4%, 3.8%, and 3.2% of isolates, respectively). A high prevalence of the 125 examined virulence-related loci (from 76.8 to 98.4% per isolate) was observed, especially in Cll isolates, suggesting a probable human pathogenicity of these strains. IMPORTANCE Currently, relatedness between bacterial isolates impacting human health is easily monitored by molecular typing methods. These approaches rely on discrete loci or whole-genome sequence (WGS) analyses. Campylobacter lari is an emergent human pathogen isolated from diverse ecological niches, including fecal material from humans and animals, aquatic environments, and seafood. The presence of C. lari in such diverse sources underlines the importance of adopting an integrated One Health approach in studying C. lari population structure for conducting epidemiological risk assessment. This retrospective study presents a comparative genomics analysis of C. lari isolates retrieved from two different continents (Europe and Australia) and from different sources (human, domestic animals, waterbirds, food, and environment). It was designed to improve knowledge regarding C. lari ecology and pathogenicity, important for developing effective surveillance and disease prevention strategies.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Europe PubMed Centra...arrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Europe PubMed Central
    Other literature type . 2022
    Data sources: PubMed Central
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Europe PubMed Centra...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Europe PubMed Central
      Other literature type . 2022
      Data sources: PubMed Central
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Raphael Seguin; David Mouillot; Joshua E. Cinner; Rick D. Stuart Smith; +5 Authors

    AbstractTropical reefs and the fish relying on them are under increasing pressure. Shallow-reef fish provide important ecological information in addition to sustaining fisheries, tourism and more. Although empirical metrics of fish biomass are widely used in fisheries management, metrics of biomass production—how much new biomass is produced over time—are rarely estimated even though such production informs potential fisheries yields. Here we estimate fish standing biomass (B), biomass production (P, the rate of biomass accumulation) and biomass turnover (P/B ratio, the rate of biomass replacement) for 1,979 tropical reef sites spanning 39 tropical countries. On the basis of fish standing biomass and biomass turnover, we propose a conceptual framework that splits reefs into three classes to visualize ecological and socio-economic risk and help guide spatial management interventions (for example, marine protected areas) to optimize returns on conservation efforts. At large scales, high turnover was associated with high human pressure and low primary productivity, whereas high biomass was associated with low human pressure and high primary productivity. Going beyond standing fish biomass to consider dynamic ecological processes can better guide regional coral reef conservation and sustainable fisheries management.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ArchiMer - Instituti...arrow_drop_down
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Nature Sustainability
    Article . 2022 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ArchiMer - Instituti...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Nature Sustainability
      Article . 2022 . Peer-reviewed
      License: CC BY
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Kerstin Klemm; Allan Cembella; Dave Clarke; Caroline Cusack; +7 Authors

    The marine dinoflagellate Alexandrium Halim represents perhaps the most significant and intensively studied genus with respect to species diversity, life history strategies, toxigenicity, biogeographical distribution, and global magnitude and consequences harmful algal blooms (HABs). The socioeconomic impacts, environmental and human health risks, and mitigation strategies for toxigenic Alexandrium blooms have also been explored in recent years. Human adaptive actions based on future scenarios of bloom dynamics and shifts in biogeographical distribution under climate-change parameters remain under development and not yet implemented on a regional scale. In the CoCliME (Co-development of climate services for adaptation to changing marine ecosystems) project these issues were addressed with respect to past, current and anticipated future status of key HAB genera and expected benefits of enhanced monitoring. Data on the distribution and frequency of Alexandrium blooms related to paralytic shellfish toxin (PST) events from key CoCliME Case Study areas, comprising the North Sea and adjacent Kattegat-Skagerrak, Norwegian Sea, and Baltic Sea, and eastern North Atlantic marginal seas, were evaluated in a contemporary and historical context over the past several decades. The first evidence of possible biogeographical expansion of Alexandrium taxa into eastern Arctic gateways was provided from DNA barcoding signatures. Various key climate change indicators, such as salinity, temperature, and water-column stratification, relevant to Alexandrium bloom initiation and development were identified. The possible influence of changing variables on bloom dynamics, magnitude, frequency and spatial and temporal distribution were interpreted in the context of regional ocean climate models. These climate change impact indicators may play key roles in selecting for the occurrence and diversity of Alexandrium species within the broader microeukaryote communities. For example, shifts to higher temperature and lower salinity regimes predicted for the southern North Sea indicate the potential for increased Alexandrium blooms, currently absent from this area. Ecological and socioeconomic impacts of Alexandrium blooms and effects on fisheries and aquaculture resources and coastal ecosystem function are evaluated, and, where feasible, effective adaptation strategies are proposed herein as emerging climate services.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Brage IMRarrow_drop_down
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    Brage IMR
    Article . 2022
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Brage IMR
    Article . 2022
    Data sources: Brage IMR
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Harmful Algae; Norwegian Open Research Archives
    Article . 2022 . Peer-reviewed
    License: CC BY NC ND
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Brage IMRarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Brage IMR
      Article . 2022
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Brage IMR
      Article . 2022
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Harmful Algae; Norwegian Open Research Archives
      Article . 2022 . Peer-reviewed
      License: CC BY NC ND
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Ivone Figueiredo; Isabel Natário; Pascal Lorance; M. Lucília Carvalho;

    International audience; The spatio-temporal dynamics of the black scabbardfish ( Aphanopus carbo Lowe, 1839) abundance in the northeast Atlantic was modeled using two linked Bayesian state-space models fitted to fishery-dependent data from trawlers operating to the west and north off the British Isles and longliners off the west coast of Portugal. The stage-structured life cycle models included species vital processes and fishing, and are linked by the migration flow between the two areas. Although data on spawner abundance and recruitment are missing, the hierarchical nature of state-space models allows a convenient representation of black scabbardfish dynamics using reliable data from the two studied areas, which correspond to two of the three main fishing grounds for the species. The approach presented is comparable to the few models developed for other species, such as European eel, where spawning and recruitment occur at restricted and distant regions. This approach is likely to remain the only option for black scabbardfish stock assessment and fisheries monitoring, as it is unlikely that data about the unobserved spawning and early life stages will become available in the near future.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ArchiMer - Instituti...arrow_drop_down
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Canadian Journal of Fisheries and Aquatic Sciences
    Article . 2022 . Peer-reviewed
    License: CSP TDM
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      Canadian Journal of Fisheries and Aquatic Sciences
      Article . 2022 . Peer-reviewed
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    Authors: S Lehuta; Y Vermard;

    AbstractHow the implementation of the European Commission's landing obligation (LO) would affect French vessels of the mixed demersal fishery in the Eastern English Channel was hardly foreseen because of the diversity of vessel characteristics and strategies in the area. Assessing whether the vessels would be able to mitigate the bio-economic impacts of LO and avoid choke situations through exemptions, by changing their fishing patterns or by avoiding areas, required fine scale spatio-temporal modelling of fish and fleet dynamics and of resulting technical interactions. We conducted a bio-economic impact assessment for seven scenarios of mitigation focussing on the differences across fleets and the impact of fleet spatial behavioural flexibility. We found that netters rapidly benefited from the LO as opposed to trawlers and that exemptions helped mitigate the economic loss with limited biomass loss. The avoidance strategies proved to be efficient in reducing unwanted catch of whiting and enabled unexpected protection of juvenile sole. Sensitivity analysis on the drivers of fishing behaviour indicated that the ability and efficiency of adapting fishing patterns depended on main gear and vessel size. Results evidenced the difficult trade-offs LO implies among stocks, fish stages, fleets, and even sub-regions, beyond the usual biological vs. economic contrasts.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ArchiMer - Instituti...arrow_drop_down
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    ICES Journal of Marine Science
    Article . 2022 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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      ICES Journal of Marine Science
      Article . 2022 . Peer-reviewed
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    Authors: Marianna Cavallo; Pascal Raux; Fabio Massa; Davide Fezzardi; +1 Authors

    AbstractIn some food production systems, sustainability and acceptability are considered umbrella concepts that can be assessed through a combination of criteria and indicators. After a remarkable and somewhat chaotic development in the early 1990s, European aquaculture has been evolving in both scientific and policy domains to improve, and to prove, its sustainability. The updated review of the literature and policy framework presented in this article highlights gaps in European studies, addressing mostly concerns over environmental impacts and food safety and less over economic impacts on other coastal activities or the effects on social values and local traditions. The analysis of the legislative framework demonstrates that the existing legislation adopted at different levels addresses most of the criteria of social acceptability through binding rules and supporting guidelines. Nonetheless, some elements of social concerns, such as the impact of escapes or the degradation of the landscape, remain unaddressed. Several actions are proposed that should be implemented by all actors involved in aquacultural management to improve social attitudes and, thus, the acceptance by the different segments of society.Integr Environ Assess Manag2023;19:896–909. © 2022 The Authors.Integrated Environmental Assessment and Managementpublished by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC).

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    Integrated Environmental Assessment and Management
    Article . 2022 . Peer-reviewed
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      Integrated Environmental Assessment and Management
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    Authors: Jingjing Liang; Javier G. P. Gamarra; Nicolas Picard; Mo Zhou; +219 Authors

    The latitudinal diversity gradient (LDG) is one of the most recognized global patterns of species richness exhibited across a wide range of taxa. Numerous hypotheses have been proposed in the past two centuries to explain LDG, but rigorous tests of the drivers of LDGs have been limited by a lack of high-quality global species richness data. Here we produce a high-resolution (0.025° × 0.025°) map of local tree species richness using a global forest inventory database with individual tree information and local biophysical characteristics from ~1.3 million sample plots. We then quantify drivers of local tree species richness patterns across latitudes. Generally, annual mean temperature was a dominant predictor of tree species richness, which is most consistent with the metabolic theory of biodiversity (MTB). However, MTB underestimated LDG in the tropics, where high species richness was also moderated by topographic, soil and anthropogenic factors operating at local scales. Given that local landscape variables operate synergistically with bioclimatic factors in shaping the global LDG pattern, we suggest that MTB be extended to account for co-limitation by subordinate drivers. United States Department of Agriculture | Agricultural Research Service https://doi.org/10.13039/100007917 National Aeronautics and Space Administration https://doi.org/10.13039/100000104

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    Repositori Obert UdL
    Article . 2022
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    Agritrop
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    Authors: Agúndez, José Antonio Pérez; Raux, Pascal; Pak, Manuela Vieira; Cavallo, Marianna; +1 Authors

    Social acceptability has become an important issue, influencing public and private decision making in many different areas of society, including the management of uses of common marine resources and space. As these uses intensify and social interactions become more complex, effective governance is a prerequisite for sustainable decision making. Participatory approaches are broadly recognised as a tool for involving stakeholders in the decision-making process to increase the acceptability of collective choices. However, despite the recommendations of new governance frameworks which promote inclusive and democratic bottom-up approaches, there is an increased complexity to apply such approach at local level. This paper aims to capture this complexity through the analysis of the local agency-led participative process and ad-hoc interviews with coastal users to understand whether and how perception and attitudes towards aquaculture evolve throughout the process. Here we present the result of a 3-year collaborative action science-policy with the agency responsible to manage aquaculture in Andalucía region (South of Spain). Even though the effectiveness of this participatory process in aquaculture planning should be assessed over the long-term, here we have identified a number of social, environmental and economic elements that can generate local opposition, especially by traditional fishers. The paper highlights the fact that the inclusion of stakeholders in the decision-making processes is not sufficient ensure the acceptance of aquaculture development. The effectiveness of the participatory processes is limited by the lack of institutional frameworks to accompany these processes, by the insufficient skills and expertise in engineering participation of the Administration staff and the poor integrated vision in policy making. As a result, the lack of coherence between political objectives constructed on a national or European scale and the complex social reality of the territory scale can lead to social opposition as experimented by the aquaculture sector.

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    Aquaculture Reports
    Article . 2022
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    Aquaculture Reports
    Other literature type . Article . 2022 . Peer-reviewed
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      Aquaculture Reports
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      Aquaculture Reports
      Other literature type . Article . 2022 . Peer-reviewed
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    Authors: Márcio A. G. Coelho; Gareth A. Pearson; Joana R. H. Boavida; Diogo Paulo; +13 Authors

    The accurate delimitation of species boundaries in nonbilaterian marine taxa is notoriously difficult, with consequences for many studies in ecology and evolution. Anthozoans are a diverse group of key structural organisms worldwide, but the lack of reliable morphological characters and informative genetic markers hampers our ability to understand species diversification. We investigated population differentiation and species limits in Atlantic (Iberian Peninsula) and Mediterranean lineages of the octocoral genus Paramuricea previously identified as P. clavata. We used a diverse set of molecular markers (microsatellites, RNA-seq derived single-copy orthologues [SCO] and mt-mutS [mitochondrial barcode]) at 49 locations. Clear segregation of Atlantic and Mediterranean lineages was found with all markers. Species-tree estimations based on SCO strongly supported these two clades as distinct, recently diverged sister species with incomplete lineage sorting, P. cf. grayi and P. clavata, respectively. Furthermore, a second putative (or ongoing) speciation event was detected in the Atlantic between two P. cf. grayi color morphotypes (yellow and purple) using SCO and supported by microsatellites. While segregating P. cf. grayi lineages showed considerable geographic structure, dominating circalittoral communities in southern (yellow) and western (purple) Portugal, their occurrence in sympatry at some localities suggests a degree of reproductive isolation. Overall, our results show that previous molecular and morphological studies have underestimated species diversity in Paramuricea occurring in the Iberian Peninsula, which has important implications for conservation planning. Finally, our findings validate the usefulness of phylotranscriptomics for resolving evolutionary relationships in octocorals This work was funded by program BIOMARES, a Pew Marine Fellowship, and FCT – Foundation for Science and Technology UIDB/04326/2020, UIDP/04326/2020, LA/P/0101/2020, PTDC/BIA-CBI/6515/2020; EU-BiodivERsA BiodivRestore-253 (FCT: DivRestore/0013/2020); EU Horizon 2020 research and innovation program (MERCES: Grant no. 689518); as well as the Inaqua Conservation Fund (Oceanário de Lisboa and National Geographic Channel) and National Geographic Society/Waitt Grant no. W153-11. This article is also a product of the French network on Marine Connectivity (GDR MarCo). M.C. was supported by postdoctoral fellowships of projects HABMAR (Grant no. MAR-01.04.02-FEAMP-0018) co-financed by the European Maritime and Fisheries Fund of the Operational Program MAR 2020 for Portugal (Portugal 2020), and BiodivAMP (Grant no. FA_06_2017_045) financed by the Directorate-General for Sea Policy of the Ministry of Economy and Sea for Portugal under the Operational Program Fundo Azul. JBL was funded by assistant researcher contract framework of the RD Unit—UID/Multi/04423/2019 – Interdisciplinary Centre of Marine and Environmental Research—financed by the European Regional Development Fund (ERDF) through COMPETE2020—Operational Program for Competitiveness and Internationalization (POCI) and national funds through FCT/MCTES (PIDDAC). JB was funded by a FCT PhD scholarship SFRH/BD/72501/2010 21 pages, 4 figures, 1 table, supporting information https://doi.org/10.1002/ece3.9740.-- Data Availability Statement: Raw RNA-seq data and mt-mutS sequences have been uploaded to NCBI's SRA (BioProject ID: PRJNA847883) and GenBank databases (Accessions numbers: ON804207-ON804214), respectively. Final sequence alignments and microsatellite data are available on DRYAD (https://doi.org/10.5061/dryad.r7sqv9sfm) With the institutional support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S) Peer reviewed

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    Repositório do ISPA
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      Article . 2023
      License: CC BY
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Cocquempot, Lucie; Thomas, Amandine; Delacourt, Christophe; Paillet, Jerome; +2 Authors

    ILICO, the French Research Infrastructure for Coastal Ocean and Nearshore Observations, is a notable example of national and pan-institutional efforts to expand knowledge of the complex processes at work within the critical coastal zone in line with the European Ocean Observing System perspective. At the interface between land and sea, ILICO is necessarily multiscale and pluri-disciplinary. It federates complementary distributed observation services (networks) monitoring coastline dynamics, sea level evolution, physical and biogeochemical water properties, coastal water dynamics, phytoplankton, benthos composition and coral reef health in order to monitor and detect episodic events (e.g. extreme events), understand physics-biology multi-scale coupling and answer operational needs and societal demands. Each network is accredited and receives funding from the French Ministry for Higher Education, Research and Innovation and national public research institutions. In addition to the sustained and long-term nature of its time-series data, ILICO's observation sites have unique geographical coverage spanning both metropolitan coastlines and those of overseas national territories. Significantly, although its scope is not strictly limited to coastal marine systems, ILICO is the French-node of the Joint European Research Infrastructure for Coastal Marine systems (JERICO-RI) led by France. ILICO's latest advances include the implementation of an open data strategy, aggregating multisource data to ensure optimal access and re-use by the scientific community, for operational ocean observing and forecasting, and by public authorities and citizens.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ArchiMer - Instituti...arrow_drop_down
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Michele Gourmelon; Amine M. Boukerb; Nesrine Nabi; Sangeeta Banerji; +9 Authors

    Members of the Campylobacter lari group are causative agents of human gastroenteritis and are frequently found in shellfish, marine waters, shorebirds, and marine mammals. Within a One Health context, we used comparative genomics to characterize isolates from a diverse range of sources and geographical locations within Europe and Australia and assess possible transmission of food, animal, and environmental isolates to the human host. A total of 158 C. lari isolates from Australia, Denmark, France, and Germany, which included 82 isolates from human stool and blood, 12 from food, 14 from domestic animal, 19 from waterbirds, and 31 from the environment were analyzed. Genome-wide analysis of the genetic diversity, virulence, and antimicrobial resistance (AMR) traits was carried-out. Most of the isolates belonged to C. lari subsp. lari (Cll; 98, 62.0%), while C. lari subsp. concheus and C. lari urease-positive thermotolerant Campylobacter (UPTC) were represented by 12 (7.6%) and 15 (9.5%) isolates, respectively. Furthermore, 33 (20.9%) isolates were not assigned a subspecies and were thus attributed to distant Campylobacter spp. clades. Whole-genome sequence-derived multilocus sequence typing (MLST) and core-genome MLST (cgMLST) analyses revealed a high genetic diversity with 97 sequence types (STs), including 60 novel STs and 14 cgMLST clusters (≤10 allele differences), respectively. The most prevalent STs were ST-21, ST-70, ST-24, and ST-58 (accounting for 13.3%, 4.4%, 3.8%, and 3.2% of isolates, respectively). A high prevalence of the 125 examined virulence-related loci (from 76.8 to 98.4% per isolate) was observed, especially in Cll isolates, suggesting a probable human pathogenicity of these strains. IMPORTANCE Currently, relatedness between bacterial isolates impacting human health is easily monitored by molecular typing methods. These approaches rely on discrete loci or whole-genome sequence (WGS) analyses. Campylobacter lari is an emergent human pathogen isolated from diverse ecological niches, including fecal material from humans and animals, aquatic environments, and seafood. The presence of C. lari in such diverse sources underlines the importance of adopting an integrated One Health approach in studying C. lari population structure for conducting epidemiological risk assessment. This retrospective study presents a comparative genomics analysis of C. lari isolates retrieved from two different continents (Europe and Australia) and from different sources (human, domestic animals, waterbirds, food, and environment). It was designed to improve knowledge regarding C. lari ecology and pathogenicity, important for developing effective surveillance and disease prevention strategies.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Europe PubMed Centra...arrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Europe PubMed Central
    Other literature type . 2022
    Data sources: PubMed Central
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Europe PubMed Centra...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Europe PubMed Central
      Other literature type . 2022
      Data sources: PubMed Central
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Raphael Seguin; David Mouillot; Joshua E. Cinner; Rick D. Stuart Smith; +5 Authors

    AbstractTropical reefs and the fish relying on them are under increasing pressure. Shallow-reef fish provide important ecological information in addition to sustaining fisheries, tourism and more. Although empirical metrics of fish biomass are widely used in fisheries management, metrics of biomass production—how much new biomass is produced over time—are rarely estimated even though such production informs potential fisheries yields. Here we estimate fish standing biomass (B), biomass production (P, the rate of biomass accumulation) and biomass turnover (P/B ratio, the rate of biomass replacement) for 1,979 tropical reef sites spanning 39 tropical countries. On the basis of fish standing biomass and biomass turnover, we propose a conceptual framework that splits reefs into three classes to visualize ecological and socio-economic risk and help guide spatial management interventions (for example, marine protected areas) to optimize returns on conservation efforts. At large scales, high turnover was associated with high human pressure and low primary productivity, whereas high biomass was associated with low human pressure and high primary productivity. Going beyond standing fish biomass to consider dynamic ecological processes can better guide regional coral reef conservation and sustainable fisheries management.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ArchiMer - Instituti...arrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Nature Sustainability
    Article . 2022 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ArchiMer - Instituti...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Nature Sustainability
      Article . 2022 . Peer-reviewed
      License: CC BY
      Data sources: Crossref
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Kerstin Klemm; Allan Cembella; Dave Clarke; Caroline Cusack; +7 Authors

    The marine dinoflagellate Alexandrium Halim represents perhaps the most significant and intensively studied genus with respect to species diversity, life history strategies, toxigenicity, biogeographical distribution, and global magnitude and consequences harmful algal blooms (HABs). The socioeconomic impacts, environmental and human health risks, and mitigation strategies for toxigenic Alexandrium blooms have also been explored in recent years. Human adaptive actions based on future scenarios of bloom dynamics and shifts in biogeographical distribution under climate-change parameters remain under development and not yet implemented on a regional scale. In the CoCliME (Co-development of climate services for adaptation to changing marine ecosystems) project these issues were addressed with respect to past, current and anticipated future status of key HAB genera and expected benefits of enhanced monitoring. Data on the distribution and frequency of Alexandrium blooms related to paralytic shellfish toxin (PST) events from key CoCliME Case Study areas, comprising the North Sea and adjacent Kattegat-Skagerrak, Norwegian Sea, and Baltic Sea, and eastern North Atlantic marginal seas, were evaluated in a contemporary and historical context over the past several decades. The first evidence of possible biogeographical expansion of Alexandrium taxa into eastern Arctic gateways was provided from DNA barcoding signatures. Various key climate change indicators, such as salinity, temperature, and water-column stratification, relevant to Alexandrium bloom initiation and development were identified. The possible influence of changing variables on bloom dynamics, magnitude, frequency and spatial and temporal distribution were interpreted in the context of regional ocean climate models. These climate change impact indicators may play key roles in selecting for the occurrence and diversity of Alexandrium species within the broader microeukaryote communities. For example, shifts to higher temperature and lower salinity regimes predicted for the southern North Sea indicate the potential for increased Alexandrium blooms, currently absent from this area. Ecological and socioeconomic impacts of Alexandrium blooms and effects on fisheries and aquaculture resources and coastal ecosystem function are evaluated, and, where feasible, effective adaptation strategies are proposed herein as emerging climate services.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Brage IMRarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Brage IMR
    Article . 2022
    Data sources: Brage IMR
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Brage IMR
    Article . 2022
    Data sources: Brage IMR
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Harmful Algae; Norwegian Open Research Archives
    Article . 2022 . Peer-reviewed
    License: CC BY NC ND
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Brage IMRarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Brage IMR
      Article . 2022
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Brage IMR
      Article . 2022
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Harmful Algae; Norwegian Open Research Archives
      Article . 2022 . Peer-reviewed
      License: CC BY NC ND
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Authors: Ivone Figueiredo; Isabel Natário; Pascal Lorance; M. Lucília Carvalho;

    International audience; The spatio-temporal dynamics of the black scabbardfish ( Aphanopus carbo Lowe, 1839) abundance in the northeast Atlantic was modeled using two linked Bayesian state-space models fitted to fishery-dependent data from trawlers operating to the west and north off the British Isles and longliners off the west coast of Portugal. The stage-structured life cycle models included species vital processes and fishing, and are linked by the migration flow between the two areas. Although data on spawner abundance and recruitment are missing, the hierarchical nature of state-space models allows a convenient representation of black scabbardfish dynamics using reliable data from the two studied areas, which correspond to two of the three main fishing grounds for the species. The approach presented is comparable to the few models developed for other species, such as European eel, where spawning and recruitment occur at restricted and distant regions. This approach is likely to remain the only option for black scabbardfish stock assessment and fisheries monitoring, as it is unlikely that data about the unobserved spawning and early life stages will become available in the near future.

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    Canadian Journal of Fisheries and Aquatic Sciences
    Article . 2022 . Peer-reviewed
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      Canadian Journal of Fisheries and Aquatic Sciences
      Article . 2022 . Peer-reviewed
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    Authors: S Lehuta; Y Vermard;

    AbstractHow the implementation of the European Commission's landing obligation (LO) would affect French vessels of the mixed demersal fishery in the Eastern English Channel was hardly foreseen because of the diversity of vessel characteristics and strategies in the area. Assessing whether the vessels would be able to mitigate the bio-economic impacts of LO and avoid choke situations through exemptions, by changing their fishing patterns or by avoiding areas, required fine scale spatio-temporal modelling of fish and fleet dynamics and of resulting technical interactions. We conducted a bio-economic impact assessment for seven scenarios of mitigation focussing on the differences across fleets and the impact of fleet spatial behavioural flexibility. We found that netters rapidly benefited from the LO as opposed to trawlers and that exemptions helped mitigate the economic loss with limited biomass loss. The avoidance strategies proved to be efficient in reducing unwanted catch of whiting and enabled unexpected protection of juvenile sole. Sensitivity analysis on the drivers of fishing behaviour indicated that the ability and efficiency of adapting fishing patterns depended on main gear and vessel size. Results evidenced the difficult trade-offs LO implies among stocks, fish stages, fleets, and even sub-regions, beyond the usual biological vs. economic contrasts.

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    ICES Journal of Marine Science
    Article . 2022 . Peer-reviewed
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      ICES Journal of Marine Science
      Article . 2022 . Peer-reviewed
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    Authors: Marianna Cavallo; Pascal Raux; Fabio Massa; Davide Fezzardi; +1 Authors

    AbstractIn some food production systems, sustainability and acceptability are considered umbrella concepts that can be assessed through a combination of criteria and indicators. After a remarkable and somewhat chaotic development in the early 1990s, European aquaculture has been evolving in both scientific and policy domains to improve, and to prove, its sustainability. The updated review of the literature and policy framework presented in this article highlights gaps in European studies, addressing mostly concerns over environmental impacts and food safety and less over economic impacts on other coastal activities or the effects on social values and local traditions. The analysis of the legislative framework demonstrates that the existing legislation adopted at different levels addresses most of the criteria of social acceptability through binding rules and supporting guidelines. Nonetheless, some elements of social concerns, such as the impact of escapes or the degradation of the landscape, remain unaddressed. Several actions are proposed that should be implemented by all actors involved in aquacultural management to improve social attitudes and, thus, the acceptance by the different segments of society.Integr Environ Assess Manag2023;19:896–909. © 2022 The Authors.Integrated Environmental Assessment and Managementpublished by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC).

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    Integrated Environmental Assessment and Management
    Article . 2022 . Peer-reviewed
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      Integrated Environmental Assessment and Management
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    Authors: Jingjing Liang; Javier G. P. Gamarra; Nicolas Picard; Mo Zhou; +219 Authors

    The latitudinal diversity gradient (LDG) is one of the most recognized global patterns of species richness exhibited across a wide range of taxa. Numerous hypotheses have been proposed in the past two centuries to explain LDG, but rigorous tests of the drivers of LDGs have been limited by a lack of high-quality global species richness data. Here we produce a high-resolution (0.025° × 0.025°) map of local tree species richness using a global forest inventory database with individual tree information and local biophysical characteristics from ~1.3 million sample plots. We then quantify drivers of local tree species richness patterns across latitudes. Generally, annual mean temperature was a dominant predictor of tree species richness, which is most consistent with the metabolic theory of biodiversity (MTB). However, MTB underestimated LDG in the tropics, where high species richness was also moderated by topographic, soil and anthropogenic factors operating at local scales. Given that local landscape variables operate synergistically with bioclimatic factors in shaping the global LDG pattern, we suggest that MTB be extended to account for co-limitation by subordinate drivers. United States Department of Agriculture | Agricultural Research Service https://doi.org/10.13039/100007917 National Aeronautics and Space Administration https://doi.org/10.13039/100000104

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    Repositori Obert UdL
    Article . 2022
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    Agritrop
    Article . 2022
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    Authors: Agúndez, José Antonio Pérez; Raux, Pascal; Pak, Manuela Vieira; Cavallo, Marianna; +1 Authors

    Social acceptability has become an important issue, influencing public and private decision making in many different areas of society, including the management of uses of common marine resources and space. As these uses intensify and social interactions become more complex, effective governance is a prerequisite for sustainable decision making. Participatory approaches are broadly recognised as a tool for involving stakeholders in the decision-making process to increase the acceptability of collective choices. However, despite the recommendations of new governance frameworks which promote inclusive and democratic bottom-up approaches, there is an increased complexity to apply such approach at local level. This paper aims to capture this complexity through the analysis of the local agency-led participative process and ad-hoc interviews with coastal users to understand whether and how perception and attitudes towards aquaculture evolve throughout the process. Here we present the result of a 3-year collaborative action science-policy with the agency responsible to manage aquaculture in Andalucía region (South of Spain). Even though the effectiveness of this participatory process in aquaculture planning should be assessed over the long-term, here we have identified a number of social, environmental and economic elements that can generate local opposition, especially by traditional fishers. The paper highlights the fact that the inclusion of stakeholders in the decision-making processes is not sufficient ensure the acceptance of aquaculture development. The effectiveness of the participatory processes is limited by the lack of institutional frameworks to accompany these processes, by the insufficient skills and expertise in engineering participation of the Administration staff and the poor integrated vision in policy making. As a result, the lack of coherence between political objectives constructed on a national or European scale and the complex social reality of the territory scale can lead to social opposition as experimented by the aquaculture sector.

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    Aquaculture Reports
    Article . 2022
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    Aquaculture Reports
    Other literature type . Article . 2022 . Peer-reviewed
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      Aquaculture Reports
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      Aquaculture Reports
      Other literature type . Article . 2022 . Peer-reviewed
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    Authors: Márcio A. G. Coelho; Gareth A. Pearson; Joana R. H. Boavida; Diogo Paulo; +13 Authors

    The accurate delimitation of species boundaries in nonbilaterian marine taxa is notoriously difficult, with consequences for many studies in ecology and evolution. Anthozoans are a diverse group of key structural organisms worldwide, but the lack of reliable morphological characters and informative genetic markers hampers our ability to understand species diversification. We investigated population differentiation and species limits in Atlantic (Iberian Peninsula) and Mediterranean lineages of the octocoral genus Paramuricea previously identified as P. clavata. We used a diverse set of molecular markers (microsatellites, RNA-seq derived single-copy orthologues [SCO] and mt-mutS [mitochondrial barcode]) at 49 locations. Clear segregation of Atlantic and Mediterranean lineages was found with all markers. Species-tree estimations based on SCO strongly supported these two clades as distinct, recently diverged sister species with incomplete lineage sorting, P. cf. grayi and P. clavata, respectively. Furthermore, a second putative (or ongoing) speciation event was detected in the Atlantic between two P. cf. grayi color morphotypes (yellow and purple) using SCO and supported by microsatellites. While segregating P. cf. grayi lineages showed considerable geographic structure, dominating circalittoral communities in southern (yellow) and western (purple) Portugal, their occurrence in sympatry at some localities suggests a degree of reproductive isolation. Overall, our results show that previous molecular and morphological studies have underestimated species diversity in Paramuricea occurring in the Iberian Peninsula, which has important implications for conservation planning. Finally, our findings validate the usefulness of phylotranscriptomics for resolving evolutionary relationships in octocorals This work was funded by program BIOMARES, a Pew Marine Fellowship, and FCT – Foundation for Science and Technology UIDB/04326/2020, UIDP/04326/2020, LA/P/0101/2020, PTDC/BIA-CBI/6515/2020; EU-BiodivERsA BiodivRestore-253 (FCT: DivRestore/0013/2020); EU Horizon 2020 research and innovation program (MERCES: Grant no. 689518); as well as the Inaqua Conservation Fund (Oceanário de Lisboa and National Geographic Channel) and National Geographic Society/Waitt Grant no. W153-11. This article is also a product of the French network on Marine Connectivity (GDR MarCo). M.C. was supported by postdoctoral fellowships of projects HABMAR (Grant no. MAR-01.04.02-FEAMP-0018) co-financed by the European Maritime and Fisheries Fund of the Operational Program MAR 2020 for Portugal (Portugal 2020), and BiodivAMP (Grant no. FA_06_2017_045) financed by the Directorate-General for Sea Policy of the Ministry of Economy and Sea for Portugal under the Operational Program Fundo Azul. JBL was funded by assistant researcher contract framework of the RD Unit—UID/Multi/04423/2019 – Interdisciplinary Centre of Marine and Environmental Research—financed by the European Regional Development Fund (ERDF) through COMPETE2020—Operational Program for Competitiveness and Internationalization (POCI) and national funds through FCT/MCTES (PIDDAC). JB was funded by a FCT PhD scholarship SFRH/BD/72501/2010 21 pages, 4 figures, 1 table, supporting information https://doi.org/10.1002/ece3.9740.-- Data Availability Statement: Raw RNA-seq data and mt-mutS sequences have been uploaded to NCBI's SRA (BioProject ID: PRJNA847883) and GenBank databases (Accessions numbers: ON804207-ON804214), respectively. Final sequence alignments and microsatellite data are available on DRYAD (https://doi.org/10.5061/dryad.r7sqv9sfm) With the institutional support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S) Peer reviewed

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    Authors: Cocquempot, Lucie; Thomas, Amandine; Delacourt, Christophe; Paillet, Jerome; +2 Authors

    ILICO, the French Research Infrastructure for Coastal Ocean and Nearshore Observations, is a notable example of national and pan-institutional efforts to expand knowledge of the complex processes at work within the critical coastal zone in line with the European Ocean Observing System perspective. At the interface between land and sea, ILICO is necessarily multiscale and pluri-disciplinary. It federates complementary distributed observation services (networks) monitoring coastline dynamics, sea level evolution, physical and biogeochemical water properties, coastal water dynamics, phytoplankton, benthos composition and coral reef health in order to monitor and detect episodic events (e.g. extreme events), understand physics-biology multi-scale coupling and answer operational needs and societal demands. Each network is accredited and receives funding from the French Ministry for Higher Education, Research and Innovation and national public research institutions. In addition to the sustained and long-term nature of its time-series data, ILICO's observation sites have unique geographical coverage spanning both metropolitan coastlines and those of overseas national territories. Significantly, although its scope is not strictly limited to coastal marine systems, ILICO is the French-node of the Joint European Research Infrastructure for Coastal Marine systems (JERICO-RI) led by France. ILICO's latest advances include the implementation of an open data strategy, aggregating multisource data to ensure optimal access and re-use by the scientific community, for operational ocean observing and forecasting, and by public authorities and citizens.

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