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SDSN - Greece Publications National Health and Medical Resear...

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SDSN - Greece Publications National Health and Medical Resear...

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10 research outcomes, page 1 of 1
  • publication . Article . 2020
    CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data
    Open Access English
    Authors:
    Vanessa R. Marcelino; Philip Thomas Lanken Conradsen Clausen; Jan P. Buchmann; Michelle Wille; Jonathan R. Iredell; Wieland Meyer; Ole Lund; Tania C. Sorrell; Edward C. Holmes;
    Persistent Identifiers

    doi: 10.1186/s13059-020-02014-2 , 10.1101/641332

    pmc: PMC7189439

    pmid: 32345331

    Publisher: Cold Spring Harbor Laboratory
    Country: Denmark
    Project: NHMRC | Protecting the public fro... (1102962), EC | COMPARE (643476)

    AbstractHigh-throughput sequencing of DNA and RNA from environmental and host-associated samples (metagenomics and metatranscriptomics) is a powerful tool to assess which organisms are present in a sample. Taxonomic identification software usually align individual short...

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  • publication . Article . 2019
    Bridging of Neisseria gonorrhoeae lineages across sexual networks in the HIV pre-exposure prophylaxis era
    Open Access English
    Authors:
    Williamson, Deborah A.; Chow, Eric P. F.; Gorrie, Claire L.; Seemann, Torsten; Ingle, Danielle J.; Higgins, Nasra; Easton, Marion; Taiaroa, George; Grad, Yonatan H.; Kwong, Jason C.; ...
    Persistent Identifiers

    doi: 10.1038/s41467-019-12053-4

    pmc: PMC6728426

    pmid: 31488838

    Publisher: Nature Portfolio
    Project: NHMRC | Improving prevention, tra... (1105905), NHMRC | An evidence based framewo... (1149991), EC | COMPARE (643476), NHMRC | Using genomics to underst... (1147735)

    Whole genome sequencing (WGS) has been used to investigate transmission of Neisseria gonorrhoeae, but to date, most studies have not combined genomic data with detailed information on sexual behaviour to define the extent of transmission across population risk groups (b...

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  • publication . Article . Preprint . 2019
    Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers
    Open Access
    Authors:
    Danielle J. Ingle; Satheesh Nair; Hassan Hartman; Philip M. Ashton; Zoe A. Dyson; Martin Day; Joanne Freedman; Marie Anne Chattaway; Kathryn E. Holt; Timothy J. Dallman;
    Persistent Identifiers

    doi: 10.1371/journal.pntd.0007620 , 10.1101/510461

    pmc: PMC6741848

    pmid: 31513580

    Publisher: Public Library of Science (PLoS)
    Country: United Kingdom
    Project: WT | A strategic vision to dri... (106158), EC | COMPARE (643476), NHMRC | A new genomic frontier fo... (1129770)

    Salmonella enterica serovar Typhi (S. Typhi) is the causative agent of typhoid fever, a systemic human infection with a burden exceeding 20 million cases each year that occurs disproportionately among children in low and middle income countries. Antimicrobial therapy is...

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  • publication . Article . 2019
    Emergence and divergence of major lineages of Shiga-toxin-producing Escherichia coli in Australia
    Open Access
    Authors:
    Ingle, Danielle J.; Gonçalves da Silva, Anders; Valcanis, Mary; Ballard, Susan A.; Seemann, Torsten; Jennison, Amy V.; Bastian, Ivan; Wise, Rolf; Kirk, Martyn D.; Howden, Benjamin P.; ...
    Persistent Identifiers

    doi: 10.1099/mgen.0.000268

    pmc: PMC6562248

    pmid: 31107203

    Publisher: Microbiology Society
    Project: EC | COMPARE (643476), NHMRC | Improving prevention, tra... (1105905), NHMRC | A new genomic frontier fo... (1129770), NHMRC | Understanding, reducing a... (1123854)

    Shiga-toxin-producing Escherichia coli (STEC) infection is an important global cause of foodborne disease. To date however, genomics-based studies of STEC have been predominately focused upon STEC collected in the Northern Hemisphere. Here, we demonstrate the population...

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  • publication . Article . 2017
    Social adversity and epigenetic aging: A multi-cohort study on socioeconomic differences in peripheral blood DNA methylation
    Open Access English
    Authors:
    Fiorito, Giovanni; Polidoro, Silvia; Dugué, Pierre-Antoine; Kivimaki, Mika; Ponzi, Erica; Matullo, Giuseppe; Guarrera, Simonetta; Assumma, Manuela B.; Georgiadis, Panagiotis; Kyrtopoulos, Soterios A.; ...
    Persistent Identifiers

    doi: 10.1038/s41598-017-16391-5

    handle: 1871.1/de51b4a4-0896-413c-8849-b78f9b5fdfc0

    pmc: PMC5701128

    pmid: 29176660

    Countries: Netherlands, Italy, United Kingdom, Switzerland, Italy, Netherlands
    Project: NHMRC | Methylation as a risk fac... (1026892), NHMRC | Methylation and the risk ... (1043616), NHMRC | An epidemiological study ... (1050198), SNSF | Socioeconomic status and ... (PZ00P3_147998), EC | ENVIROGENOMARKERS (226756), EC | LIFEPATH (633666), NHMRC | Methylation as a risk and... (1011618)

    Abstract Low socioeconomic status (SES) is associated with earlier onset of age-related chronic conditions and reduced life-expectancy, but the underlying biomolecular mechanisms remain unclear. Evidence of DNA-methylation differences by SES suggests a possible associat...

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  • publication . Article . 2017
    Cohort Profile: Pregnancy And Childhood Epigenetics (PACE) Consortium
    Open Access
    Authors:
    Felix, Janine F; Joubert, Bonnie R; Baccarelli, Andrea A; Sharp, Gemma C; Almqvist, Catarina; Annesi-Maesano, Isabella; Arshad, S. Hasan; Baïz, Nour; Bakermans-Kranenburg, Marian J.; Bakulski, Kelly M; ...
    Persistent Identifiers

    doi: 10.1093/ije/dyx190

    handle: 10481/64551 , 11370/c61ccefd-02b0-444a-88a4-e4c8433d9294 , 10067/1499240151162165141 , 1874/376458 , 1887/64059 , 1983/2d883040-fb7e-4046-9c3e-69779251f2fa , 1765/105016 , 1956/17665

    pmc: PMC5837319

    pmid: 29025028

    Countries: Finland, United States, United Kingdom, Norway, Spain, Spain, Netherlands, United Kingdom, Denmark, United Kingdom ...
    Project: WT , EC | EMBRYOandLATERHEALTH (648916), EC | MEDALL (261357), NIH | Exploring the Fetal Origi... (5R01DK068001-07), WT | The Avon Longitudinal Stu... (102215), EC | EARLYNUTRITION (289346), NIH | National CADDRE Study: Ch... (5U10DD000182-05), WT | Genome-wide association s... (084762), NIH | Colorado Clinical and Tra... (5UL1TR001082-05), NIH | Environment, The Perinata... (5R01ES017646-03),...

    United States Department of Health & Human Services National Institutes of Health (NIH) - USA NIH National Institute of Environmental Health Sciences (NIEHS) P30ES007048 P01ES009605 P01ES022832 P50ES018172 R01ES023067 ZIAES049019 P30ES017885 ZIAES044003 P01ES009581 R01E...

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  • publication . Preprint . 2017
    Epidemic establishment and cryptic transmission of Zika virus in Brazil and the Americas
    Open Access
    Authors:
    N. R. Faria; J. Quick; I. Morales; J. Thézé; J.G. Jesus; M. Giovanetti; M. U. G. Kraemer; S. C. Hill; A. Black; A. C. da Costa; ...
    Persistent Identifiers

    doi: 10.1101/105171

    Publisher: Cold Spring Harbor Laboratory
    Project: EC | PREDEMICS (278433), EC | COMPARE (643476), EC | ZIKAlliance (734548), NIH | Real-time tracking of vir... (5R35GM119774-03), WT | Genomic Medicine and Stat... (102427), NSF | Graduate Research Fellows... (1256082), WT | Real-time genetic cartogr... (204311), NHMRC | Australia Fellowship (1037231), NIH | Broad Detection of Infect... (5R01HL105704-05), EC | PATHPHYLODYN (614725)

    Zika virus (ZIKV) transmission in the Americas was first confirmed in May 2015 in Northeast Brazil1. Brazil has the highest number of reported ZIKV cases worldwide (>200,000 by 24 Dec 20162) as well as the greatest number of cases associated with microcephaly and oth...

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  • publication . Article . 2015
    One health, multiple challenges: The inter-species transmission of influenza A virus.
    Open Access
    Authors:
    Short, Kirsty R; Richard, Mathilde; Verhagen, Josanne H; van Riel, Debby; Schrauwen, Eefje J A; van den Brand, Judith M A; Mänz, Benjamin; Bodewes, Rogier; Herfst, Sander; FAH SIB; ...
    Persistent Identifiers

    doi: 10.1016/j.onehlt.2015.03.001

    pmc: PMC4542011

    pmid: 26309905

    handle: 1874/334653

    Country: Netherlands
    Project: NHMRC | The role of inflammation ... (1054081), EC | COMPARE (643476), EC | ANTIGONE (278976)

    AbstractInfluenza A viruses are amongst the most challenging viruses that threaten both human and animal health. Influenza A viruses are unique in many ways. Firstly, they are unique in the diversity of host species that they infect. This includes waterfowl (the origina...

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  • publication . Article . 2014
    The MOBI-Kids Study Protocol: Challenges in Assessing Childhood and Adolescent Exposure to Electromagnetic Fields from Wireless Telecommunication Technologies and Possible Association with Brain Tumor Risk
    Open Access English
    Authors:
    Sadetzki, Siegal; Langer, Chelsea Eastman; Bruchim, Revital; Kundi, Michael; Merletti, Franco; Vermeulen, Roel; Kromhout, Hans; Lee, Ae-Kyoung; Maslanyj, Myron; Sim, Malcolm R; ...
    Persistent Identifiers

    doi: 10.3389/fpubh.2014.00124

    handle: 10272/18364 , 10550/44775 , 1874/305030 , 20.500.12105/13942

    pmc: PMC4172002

    pmid: 25295243

    Publisher: Frontiers Media S.A.
    Countries: Netherlands, Italy, Spain, Italy
    Project: NHMRC | Risk of brain cancer from... (546130), CIHR , NSERC , EC | MOBI-KIDS (226873)

    We would like to thank all of the research assistants and interviewers in the study centers for their enormous efforts to ensure the research leading to these results has received funding from by the European Community's Seventh Framework Programme (FP7/2007-2013) under...

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  • publication . Article . 2012
    Characterization of transition diets spanning infancy and toddlerhood: a novel, multiple-time-point application of principal components analysis
    Open Access
    Authors:
    Brazionis, Laima; Golley, Rebecca K; Mittinty, Murthy N; Smithers, Lisa G; Emmett, Pauline; Northstone, Kate; Lynch, John W;
    Persistent Identifiers

    doi: 10.3945/ajcn.111.026575

    handle: 1959.8/122522

    Publisher: Oxford University Press (OUP)
    Country: Australia
    Project: WT , EC | HABEAT (245012), NHMRC | Developing innovative, ef... (478115)

    Background: The portrayal of diet over time is a natural progression from the characterization of diet at single time points. The transition dietary period, a dynamic period of rapid dietary change spanning infancy and toddlerhood when children shift from a milk-based t...

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10 research outcomes, page 1 of 1