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description Publicationkeyboard_double_arrow_right Article 2020 Denmark, Germany, Finland, Netherlands, Spain, Singapore, Serbia, Denmark, CroatiaPublisher:Springer Science and Business Media LLC Funded by:EC | COMPARE, EC | NoPHAMEEC| COMPARE ,EC| NoPHAMEAuthors: Nieuwenhuijse, David F.; Oude Munnink, Bas B.; Phan, My V.T.; Hendriksen, Rene S.; +106 AuthorsNieuwenhuijse, David F.; Oude Munnink, Bas B.; Phan, My V.T.; Hendriksen, Rene S.; Bego, Artan; Rees, Catherine; Neilson, Elizabeth Heather; Coventry, Kris; Collignon, Peter; Allerberger, Franz; Rahube, Teddie O.; Oliveira, Guilherme; Ivanov, Ivan; Sopheak, Thet; Vuthy, Yith; Yost, Christopher K.; Tabo, Djim adjim; Cuadros-Orellana, Sara; Ke, Changwen; Zheng, Huanying; Baisheng, Li; Jiao, Xiaoyang; Donado-Godoy, Pilar; Coulibaly, Kalpy Julien; Hrenovic, Jasna; Jergović, Matijana; Karpíšková, Renáta; Elsborg, Bodil; Legesse, Mengistu; Eguale, Tadesse; Heikinheimo, Annamari; Villacis, Jose Eduardo; Sanneh, Bakary; Malania, Lile; Nitsche, Andreas; Brinkmann, Annika; Saba, Courage Kosi Setsoafia; Kocsis, Bela; Solymosi, Norbert; Thorsteinsdottir, Thorunn R.; Hatha, Abdulla Mohamed; Alebouyeh, Masoud; Morris, Dearbhaile; O’Connor, Louise; Cormican, Martin; Moran-Gilad, Jacob; Battisti, Antonio; Alba, Patricia; Shakenova, Zeinegul; Kiiyukia, Ciira; Ng’eno, Eric; Raka, Lul; Bērziņš, Aivars; Avsejenko, Jeļena; Bartkevics, Vadims; Penny, Christian; Rajandas, Heraa; Parimannan, Sivachandran; Haber, Malcolm Vella; Pal, Pushkar; Schmitt, Heike; van Passel, Mark; van de Schans, Milou G.M.; Zuidema, Tina; Jeunen, Gert Jan; Gemmell, Neil; Fashae, Kayode; Wester, Astrid Louise; Holmstad, Rune; Hasan, Rumina; Shakoor, Sadia; Rojas, Maria Luz Zamudio; Wasyl, Dariusz; Bosevska, Golubinka; Kochubovski, Mihail; Radu, Cojocaru; Gassama†, Amy; Radosavljevic, Vladimir; Tay, Moon Y.F.; Zuniga-Montanez, Rogelio; Wuertz, Stefan; Gavačová, Dagmar; Trkov, Marija; Keddy, Karen; Esterhuyse, Kerneels; Cerdà-Cuéllar, Marta; Pathirage, Sujatha; Larsson, D. G.Joakim; Norrgren, Leif; Örn, Stefan; Van der Heijden, Tanja; Kumburu, Happiness Houka; de RodaHusman, Ana Maria; Njanpop-Lafourcade, Berthe Marie; Bidjada, Pawou; Nikiema-Pessinaba, Somtinda Christelle; Levent, Belkis; Meschke, John Scott; Beck, Nicola Koren; Van Dang, Chinh; Tran, Doan Minh Nguyen; Do Phuc, Nguyen; Kwenda, Geoffrey; Munk, Patrick; Venkatakrishnan, Shweta; Aarestrup, Frank M.; Cotten, Matthew; Koopmans, Marion P.G.; IRAS OH Epidemiology Microbial Agents; dIRAS RA-I&I I&I;handle: 1874/408855 , 10138/326696 , 10029/624231 , 1765/129624 , 20.500.12327/1013 , 10029/625287
pmc: PMC8387382 , PMC7426863
handle: 1874/408855 , 10138/326696 , 10029/624231 , 1765/129624 , 20.500.12327/1013 , 10029/625287
pmc: PMC8387382 , PMC7426863
The rapid development of megacities, and their growing connectedness across the world is becoming a distinct driver for emerging disease outbreaks. Early detection of unusual disease emergence and spread should therefore include such cities as part of risk-based surveillance. A catch-all metagenomic sequencing approach of urban sewage could potentially provide an unbiased insight into the dynamics of viral pathogens circulating in a community irrespective of access to care, a potential which already has been proven for the surveillance of poliovirus. Here, we present a detailed characterization of sewage viromes from a snapshot of 81 high density urban areas across the globe, including in-depth assessment of potential biases, as a proof of concept for catch-all viral pathogen surveillance. We show the ability to detect a wide range of viruses and geographical and seasonal differences for specific viral groups. Our findings offer a cross-sectional baseline for further research in viral surveillance from urban sewage samples and place previous studies in a global perspective. info:eu-repo/semantics/publishedVersion
CORE (RIOXX-UK Aggre... arrow_drop_down NARCIS; Utrecht University RepositoryArticle . 2020Scientific ReportsArticle . 2020Full-Text: http://europepmc.org/articles/PMC7426863Data sources: PubMed CentralNARCIS; Scientific ReportsArticle . 2020Research@WUR; Recolector de Ciencia Abierta, RECOLECTA; Scientific ReportsOther literature type . Article . 2020 . Peer-reviewedLicense: CC BYEurope PubMed CentralArticle . 2021Full-Text: http://europepmc.org/articles/PMC8387382Data sources: PubMed CentralOnline Research Database In TechnologyArticle . 2020Data sources: Online Research Database In TechnologyDigital Repository of NTUArticle . 2020License: © 2020 The Author(s). This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.Data sources: Digital Repository of NTUCopenhagen University Research Information SystemArticle . 2020Data sources: Copenhagen University Research Information SystemPublikationsserver des Robert Koch-InstitutsArticle . 2020 . Peer-reviewedLicense: CC BYData sources: Publikationsserver des Robert Koch-InstitutsHELDA - Digital Repository of the University of HelsinkiArticle . 2021 . Peer-reviewedData sources: HELDA - Digital Repository of the University of HelsinkiCroatian Scientific Bibliography - CROSBIArticle . 2020Data sources: Croatian Scientific Bibliography - CROSBIadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1038/s41598-020-69869-0&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 36 citations 36 popularity Top 1% influence Top 10% impulse Top 10% Powered by BIP!visibility 69visibility views 69 download downloads 102 Powered bymore_vert CORE (RIOXX-UK Aggre... arrow_drop_down NARCIS; Utrecht University RepositoryArticle . 2020Scientific ReportsArticle . 2020Full-Text: http://europepmc.org/articles/PMC7426863Data sources: PubMed CentralNARCIS; Scientific ReportsArticle . 2020Research@WUR; Recolector de Ciencia Abierta, RECOLECTA; Scientific ReportsOther literature type . Article . 2020 . Peer-reviewedLicense: CC BYEurope PubMed CentralArticle . 2021Full-Text: http://europepmc.org/articles/PMC8387382Data sources: PubMed CentralOnline Research Database In TechnologyArticle . 2020Data sources: Online Research Database In TechnologyDigital Repository of NTUArticle . 2020License: © 2020 The Author(s). This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.Data sources: Digital Repository of NTUCopenhagen University Research Information SystemArticle . 2020Data sources: Copenhagen University Research Information SystemPublikationsserver des Robert Koch-InstitutsArticle . 2020 . Peer-reviewedLicense: CC BYData sources: Publikationsserver des Robert Koch-InstitutsHELDA - Digital Repository of the University of HelsinkiArticle . 2021 . Peer-reviewedData sources: HELDA - Digital Repository of the University of HelsinkiCroatian Scientific Bibliography - CROSBIArticle . 2020Data sources: Croatian Scientific Bibliography - CROSBIadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1038/s41598-020-69869-0&type=result"></script>'); --> </script>
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description Publicationkeyboard_double_arrow_right Article 2020 Denmark, Germany, Finland, Netherlands, Spain, Singapore, Serbia, Denmark, CroatiaPublisher:Springer Science and Business Media LLC Funded by:EC | COMPARE, EC | NoPHAMEEC| COMPARE ,EC| NoPHAMEAuthors: Nieuwenhuijse, David F.; Oude Munnink, Bas B.; Phan, My V.T.; Hendriksen, Rene S.; +106 AuthorsNieuwenhuijse, David F.; Oude Munnink, Bas B.; Phan, My V.T.; Hendriksen, Rene S.; Bego, Artan; Rees, Catherine; Neilson, Elizabeth Heather; Coventry, Kris; Collignon, Peter; Allerberger, Franz; Rahube, Teddie O.; Oliveira, Guilherme; Ivanov, Ivan; Sopheak, Thet; Vuthy, Yith; Yost, Christopher K.; Tabo, Djim adjim; Cuadros-Orellana, Sara; Ke, Changwen; Zheng, Huanying; Baisheng, Li; Jiao, Xiaoyang; Donado-Godoy, Pilar; Coulibaly, Kalpy Julien; Hrenovic, Jasna; Jergović, Matijana; Karpíšková, Renáta; Elsborg, Bodil; Legesse, Mengistu; Eguale, Tadesse; Heikinheimo, Annamari; Villacis, Jose Eduardo; Sanneh, Bakary; Malania, Lile; Nitsche, Andreas; Brinkmann, Annika; Saba, Courage Kosi Setsoafia; Kocsis, Bela; Solymosi, Norbert; Thorsteinsdottir, Thorunn R.; Hatha, Abdulla Mohamed; Alebouyeh, Masoud; Morris, Dearbhaile; O’Connor, Louise; Cormican, Martin; Moran-Gilad, Jacob; Battisti, Antonio; Alba, Patricia; Shakenova, Zeinegul; Kiiyukia, Ciira; Ng’eno, Eric; Raka, Lul; Bērziņš, Aivars; Avsejenko, Jeļena; Bartkevics, Vadims; Penny, Christian; Rajandas, Heraa; Parimannan, Sivachandran; Haber, Malcolm Vella; Pal, Pushkar; Schmitt, Heike; van Passel, Mark; van de Schans, Milou G.M.; Zuidema, Tina; Jeunen, Gert Jan; Gemmell, Neil; Fashae, Kayode; Wester, Astrid Louise; Holmstad, Rune; Hasan, Rumina; Shakoor, Sadia; Rojas, Maria Luz Zamudio; Wasyl, Dariusz; Bosevska, Golubinka; Kochubovski, Mihail; Radu, Cojocaru; Gassama†, Amy; Radosavljevic, Vladimir; Tay, Moon Y.F.; Zuniga-Montanez, Rogelio; Wuertz, Stefan; Gavačová, Dagmar; Trkov, Marija; Keddy, Karen; Esterhuyse, Kerneels; Cerdà-Cuéllar, Marta; Pathirage, Sujatha; Larsson, D. G.Joakim; Norrgren, Leif; Örn, Stefan; Van der Heijden, Tanja; Kumburu, Happiness Houka; de RodaHusman, Ana Maria; Njanpop-Lafourcade, Berthe Marie; Bidjada, Pawou; Nikiema-Pessinaba, Somtinda Christelle; Levent, Belkis; Meschke, John Scott; Beck, Nicola Koren; Van Dang, Chinh; Tran, Doan Minh Nguyen; Do Phuc, Nguyen; Kwenda, Geoffrey; Munk, Patrick; Venkatakrishnan, Shweta; Aarestrup, Frank M.; Cotten, Matthew; Koopmans, Marion P.G.; IRAS OH Epidemiology Microbial Agents; dIRAS RA-I&I I&I;handle: 1874/408855 , 10138/326696 , 10029/624231 , 1765/129624 , 20.500.12327/1013 , 10029/625287
pmc: PMC8387382 , PMC7426863
handle: 1874/408855 , 10138/326696 , 10029/624231 , 1765/129624 , 20.500.12327/1013 , 10029/625287
pmc: PMC8387382 , PMC7426863
The rapid development of megacities, and their growing connectedness across the world is becoming a distinct driver for emerging disease outbreaks. Early detection of unusual disease emergence and spread should therefore include such cities as part of risk-based surveillance. A catch-all metagenomic sequencing approach of urban sewage could potentially provide an unbiased insight into the dynamics of viral pathogens circulating in a community irrespective of access to care, a potential which already has been proven for the surveillance of poliovirus. Here, we present a detailed characterization of sewage viromes from a snapshot of 81 high density urban areas across the globe, including in-depth assessment of potential biases, as a proof of concept for catch-all viral pathogen surveillance. We show the ability to detect a wide range of viruses and geographical and seasonal differences for specific viral groups. Our findings offer a cross-sectional baseline for further research in viral surveillance from urban sewage samples and place previous studies in a global perspective. info:eu-repo/semantics/publishedVersion
CORE (RIOXX-UK Aggre... arrow_drop_down NARCIS; Utrecht University RepositoryArticle . 2020Scientific ReportsArticle . 2020Full-Text: http://europepmc.org/articles/PMC7426863Data sources: PubMed CentralNARCIS; Scientific ReportsArticle . 2020Research@WUR; Recolector de Ciencia Abierta, RECOLECTA; Scientific ReportsOther literature type . Article . 2020 . Peer-reviewedLicense: CC BYEurope PubMed CentralArticle . 2021Full-Text: http://europepmc.org/articles/PMC8387382Data sources: PubMed CentralOnline Research Database In TechnologyArticle . 2020Data sources: Online Research Database In TechnologyDigital Repository of NTUArticle . 2020License: © 2020 The Author(s). This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.Data sources: Digital Repository of NTUCopenhagen University Research Information SystemArticle . 2020Data sources: Copenhagen University Research Information SystemPublikationsserver des Robert Koch-InstitutsArticle . 2020 . Peer-reviewedLicense: CC BYData sources: Publikationsserver des Robert Koch-InstitutsHELDA - Digital Repository of the University of HelsinkiArticle . 2021 . Peer-reviewedData sources: HELDA - Digital Repository of the University of HelsinkiCroatian Scientific Bibliography - CROSBIArticle . 2020Data sources: Croatian Scientific Bibliography - CROSBIadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1038/s41598-020-69869-0&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 36 citations 36 popularity Top 1% influence Top 10% impulse Top 10% Powered by BIP!visibility 69visibility views 69 download downloads 102 Powered bymore_vert CORE (RIOXX-UK Aggre... arrow_drop_down NARCIS; Utrecht University RepositoryArticle . 2020Scientific ReportsArticle . 2020Full-Text: http://europepmc.org/articles/PMC7426863Data sources: PubMed CentralNARCIS; Scientific ReportsArticle . 2020Research@WUR; Recolector de Ciencia Abierta, RECOLECTA; Scientific ReportsOther literature type . Article . 2020 . Peer-reviewedLicense: CC BYEurope PubMed CentralArticle . 2021Full-Text: http://europepmc.org/articles/PMC8387382Data sources: PubMed CentralOnline Research Database In TechnologyArticle . 2020Data sources: Online Research Database In TechnologyDigital Repository of NTUArticle . 2020License: © 2020 The Author(s). This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.Data sources: Digital Repository of NTUCopenhagen University Research Information SystemArticle . 2020Data sources: Copenhagen University Research Information SystemPublikationsserver des Robert Koch-InstitutsArticle . 2020 . Peer-reviewedLicense: CC BYData sources: Publikationsserver des Robert Koch-InstitutsHELDA - Digital Repository of the University of HelsinkiArticle . 2021 . Peer-reviewedData sources: HELDA - Digital Repository of the University of HelsinkiCroatian Scientific Bibliography - CROSBIArticle . 2020Data sources: Croatian Scientific Bibliography - CROSBIadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1038/s41598-020-69869-0&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu