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description Publicationkeyboard_double_arrow_right Article 2021 FrancePublisher:Frontiers Media SA Funded by:EC | AquaNESEC| AquaNESMarc Crampon; Coralie Soulier; Pauline Sidoli; Jennifer Hellal; Catherine Joulian; Mickaël Charron; Quentin Guillemoto; Quentin Guillemoto; Géraldine Picot-Colbeaux; Marie Pettenati;The demand for energy and chemicals is constantly growing, leading to an increase of the amounts of contaminants discharged to the environment. Among these, pharmaceutical molecules are frequently found in treated wastewater that is discharged into superficial waters. Indeed, wastewater treatment plants (WWTPs) are designed to remove organic pollution from urban effluents but are not specific, especially toward contaminants of emerging concern (CECs), which finally reach the natural environment. In this context, it is important to study the fate of micropollutants, especially in a soil aquifer treatment (SAT) context for water from WWTPs, and for the most persistent molecules such as benzodiazepines. In the present study, soils sampled in a reed bed frequently flooded by water from a WWTP were spiked with diazepam and oxazepam in microcosms, and their concentrations were monitored for 97 days. It appeared that the two molecules were completely degraded after 15 days of incubation. Samples were collected during the experiment in order to follow the dynamics of the microbial communities, based on 16S rRNA gene sequencing for Archaea and Bacteria, and ITS2 gene for Fungi. The evolution of diversity and of specific operating taxonomic units (OTUs) highlighted an impact of the addition of benzodiazepines, a rapid resilience of the fungal community and an evolution of the bacterial community. It appeared that OTUs from the Brevibacillus genus were more abundant at the beginning of the biodegradation process, for diazepam and oxazepam conditions. Additionally, Tax4Fun tool was applied to 16S rRNA gene sequencing data to infer on the evolution of specific metabolic functions during biodegradation. It finally appeared that the microbial community in soils frequently exposed to water from WWTP, potentially containing CECs such as diazepam and oxazepam, may be adapted to the degradation of persistent contaminants.
Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2021Full-Text: http://europepmc.org/articles/PMC8667618Data sources: PubMed Centraladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fmicb.2021.742000&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 4 citations 4 popularity Top 10% influence Average impulse Average Powered by BIP!more_vert Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2021Full-Text: http://europepmc.org/articles/PMC8667618Data sources: PubMed Centraladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fmicb.2021.742000&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2021 FrancePublisher:MDPI AG Funded by:EC | IMAGE, EC | GEMexEC| IMAGE ,EC| GEMexDavid Escobedo; Patricia Patrier; Daniel Beaufort; Benoit Gibert; Léa Lévy; Nathaniel Findling; Annette Mortensen;doi: 10.3390/min11090935
This paper revisits the clay mineralogy of the “smectite” alteration zone in the Krafla geo-thermal field via the study of an exploratory well in which temperatures range from 40 °C to 215 °C. The clay alteration consists of several mineral assemblages superimposed in time and space, resulting from different stages of water-rock interaction. Trioctahedral clay minerals (chlorite, corrensite and smectite) are observed throughout the studied section. These minerals can form in nearly closed systems as replacements of groundmass minerals/glass after interactions with resident and nearly stagnant fluids not far from chemical equilibrium (neutral to basic pH conditions) or from direct precipitation from geothermal fluids. They are locally superimposed by Al clay phases (smectite, illite/smectite and kaolinite), which result from intense leaching of the host rocks due to their interaction with low pH fluids under strong W/R ratios. The absence of mineralogical zoning is explained by the fact that hydrothermal alteration is strongly dependent on very recent hydrodynamics. The current fluid circulation generates trioctahedral clays at depth that cannot be distinguished from pervasive earlier alteration. The only easily detectable signature of current activity and the most relevant signature for geothermal exploration is the presence of Al dioctahedral phases since it indicates leaching and intense hydrothermal activity. International audience
Minerals arrow_drop_down MineralsOther literature type . Article . 2021 . Peer-reviewedLicense: CC BYFull-Text: http://www.mdpi.com/2075-163X/11/9/935/pdfMémoires en Sciences de l'Information et de la Communication; HAL-IRDArticle . 2021License: CC BYFull-Text: https://hal.science/hal-03402731/documentadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3390/min11090935&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess Routesgold 2 citations 2 popularity Average influence Average impulse Average Powered by BIP!more_vert Minerals arrow_drop_down MineralsOther literature type . Article . 2021 . Peer-reviewedLicense: CC BYFull-Text: http://www.mdpi.com/2075-163X/11/9/935/pdfMémoires en Sciences de l'Information et de la Communication; HAL-IRDArticle . 2021License: CC BYFull-Text: https://hal.science/hal-03402731/documentadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3390/min11090935&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2021 France, ItalyPublisher:Frontiers Media SA Funded by:EC | COMPAREEC| COMPARECadel-Six, Sabrina; Cherchame, Emeline; Douarre, Pierre-Emmanuel; Tang, Yue; Felten, Arnaud; Barbet, Pauline; Litrup, Eva; Banerji, Sangeeta; Simon, Sandra; Pasquali, Federique; Gourmelon, Michèle; Mensah, Nana; Borowiak, Maria; Mistou, Michel-Yves; Petrovska, Liljana;The European epidemic monophasic variant of Salmonella enterica serovar Typhimurium ( S . 1 ,4,[5],12:i:-) characterized by the multi locus sequence type ST34 and the antimicrobial resistance ASSuT profile has become one of the most common serovars in Europe (EU) and the United States (US). In this study, we reconstructed the time-scaled phylogeny and evolution of this Salmonella in Europe. The epidemic S . 1 ,4,[5],12:i:- ST34 emerged in the 1980s by an acquisition of the Salmonella Genomic Island (SGI)-4 at the 3′ end of the phenylalanine phe tRNA locus conferring resistance to copper and arsenic toxicity. Subsequent integration of the Tn21 transposon into the fljAB locus gave resistance to mercury toxicity and several classes of antibiotics used in food-producing animals (ASSuT profile). The second step of the evolution occurred in the 1990s, with the integration of mTmV and mTmV-like prophages carrying the perC and/or sopE genes involved in the ability to reduce nitrates in intestinal contents and facilitate the disruption of the junctions of the host intestinal epithelial cells. Heavy metals are largely used as food supplements or pesticide for cultivation of seeds intended for animal feed so the expansion of the epidemic S. 1,4,[5],12:i:- ST34 was strongly related to the multiple-heavy metal resistance acquired by transposons, integrative and conjugative elements and facilitated by the escape until 2011 from the regulatory actions applied in the control of S. Typhimurium in Europe. The genomic plasticity of the epidemic S. 1,4,[5],12:i:- was demonstrated in our study by the analysis of the plasmidome. We were able to identify plasmids harboring genes mediating resistance to phenicols, colistin, and fluoroquinolone and also describe for the first time in six of the analyzed genomes the presence of two plasmids (pERR1744967-1 and pERR2174855-2) previously described only in strains of enterotoxigenic Escherichia coli and E. fergusonii . International audience
Frontiers in Microbi... arrow_drop_down Frontiers in Microbiology; Archivio istituzionale della ricerca - Alma Mater Studiorum Università di BolognaArticle . 2021 . Peer-reviewedLicense: CC BYEurope PubMed CentralArticle . 2021Full-Text: http://europepmc.org/articles/PMC8175864Data sources: PubMed CentralArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of IfremerArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of IfremerHAL Descartes; Mémoires en Sciences de l'Information et de la CommunicationArticle . 2021License: CC BYHAL Descartes; Mémoires en Sciences de l'Information et de la Communication; HAL AMUArticle . 2021License: CC BYadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fmicb.2021.651124&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess Routesgold 19 citations 19 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert Frontiers in Microbi... arrow_drop_down Frontiers in Microbiology; Archivio istituzionale della ricerca - Alma Mater Studiorum Università di BolognaArticle . 2021 . Peer-reviewedLicense: CC BYEurope PubMed CentralArticle . 2021Full-Text: http://europepmc.org/articles/PMC8175864Data sources: PubMed CentralArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of IfremerArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of IfremerHAL Descartes; Mémoires en Sciences de l'Information et de la CommunicationArticle . 2021License: CC BYHAL Descartes; Mémoires en Sciences de l'Information et de la Communication; HAL AMUArticle . 2021License: CC BYadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fmicb.2021.651124&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2021 Portugal, FrancePublisher:Elsevier BV Funded by:EC | ERA4CSEC| ERA4CSSimoes, Sofia; Amorim, Filipa; Siggini, Gildas; Sessa, Valentina; Saint-Drenan, Yves-Marie; Carvalho, Sílvia; Mraihi, Hamza; Assoumou, Edi;handle: 10451/49278
Abstract Climate and weather conditions influence energy demand. as well as electricity generation, especially due to the strong development of renewable energy. The changes of the European energy mix, together with ongoing climate change, raise a number of questions on impact on the electricity sector. In this paper we present results for the whole of the European power sector regarding on how considering current and future climate variability affects the results of a TIMES energy system model for the whole European power sector (eTIMES-EU) up to 2050. For each member-state we consider six climate projections to generate future capacity factors for wind, solar and hydro power generation. as well as temperature impact on electricity demand for heating and cooling. These are input into the eTIMES-EU model to assess how climate affects the optimal operation of the power system and if current EU-wide RES and emissions target deployment may be affected. Results show that although at EU-wide level there are no substantial changes, there are significant differences in countries RES deployment (especially wind and solar) and in electricity trade.
DOAJ arrow_drop_down LAReferencia - Red Federada de Repositorios Institucionales de Publicaciones Científicas Latinoamericanas; Energy Strategy ReviewsArticle . 2021 . Peer-reviewedLicense: CC BY NC NDUniversidade de Lisboa: Repositório.ULArticle . 2021License: CC BY NC NDData sources: Universidade de Lisboa: Repositório.ULadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.esr.2021.100657&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 22 citations 22 popularity Top 10% influence Top 10% impulse Top 10% Powered by BIP!visibility 39visibility views 39 download downloads 75 Powered bymore_vert DOAJ arrow_drop_down LAReferencia - Red Federada de Repositorios Institucionales de Publicaciones Científicas Latinoamericanas; Energy Strategy ReviewsArticle . 2021 . Peer-reviewedLicense: CC BY NC NDUniversidade de Lisboa: Repositório.ULArticle . 2021License: CC BY NC NDData sources: Universidade de Lisboa: Repositório.ULadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.esr.2021.100657&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2021 FrancePublisher:MDPI AG Funded by:EC | AgriLinkEC| AgriLinkAuthors: Polita, Fabiola; Madureira, Livia;Polita, Fabiola; Madureira, Livia;The Multi-Level Perspective (MLP) is an analytical framework developed to explain transitions towards sustainability. This article aims to contribute to enhancing the use of the MLP to understand the transitions towards sustainability in agriculture. We propose that MLP is an insightful framework to capture particular micro-level trajectories of adopting innovations. The Douro wine region in Northern Portugal, known worldwide for the wines that are produced there, was the study area of our empirical research. This region has become the stage for developing a complex agroecological innovation, the Ecological Infrastructures (EIs). These consist of a combination of techniques that aim to expand the ecosystem services of the vineyards. The uniqueness of its development at the farm level originates a multiplicity of innovation trajectories, which are the focus of this study. Content analysis of 20 interviews with winegrowers was performed, and the results were analysed through the MLP framework. This allowed us to conclude that a process of transition towards the sustainability of region-level winegrowing is underway, and that it can be explained by the overlapping of different paths of adopting innovation. Our research shows that in-depth analysis of qualitative data, done through content analysis, can be used to amplify the insightfulness of MLP by enabling it to uncover the microscale transition pathways that shape uneven region-level transitions. International audience
Land arrow_drop_down LandOther literature type . Article . 2021 . Peer-reviewedLicense: CC BYFull-Text: https://www.mdpi.com/2073-445X/10/3/322/pdfadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3390/land10030322&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 2 citations 2 popularity Average influence Average impulse Average Powered by BIP!visibility 13visibility views 13 download downloads 26 Powered bymore_vert Land arrow_drop_down LandOther literature type . Article . 2021 . Peer-reviewedLicense: CC BYFull-Text: https://www.mdpi.com/2073-445X/10/3/322/pdfadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3390/land10030322&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2021 FrancePublisher:Frontiers Media SA Funded by:EC | ReMIXEC| ReMIXBenedikt Haug; Benedikt Haug; Monika M. Messmer; Jérôme Enjalbert; Isabelle Goldringer; Emma Forst; Timothée Flutre; Tristan Mary-Huard; Tristan Mary-Huard; Pierre Hohmann;Mixed cropping has been suggested as a resource-efficient approach to meet high produce demands while maintaining biodiversity and minimizing environmental impact. Current breeding programs do not select for enhanced general mixing ability (GMA) and neglect biological interactions within species mixtures. Clear concepts and efficient experimental designs, adapted to breeding for mixed cropping and encoded into appropriate statistical models, are lacking. Thus, a model framework for GMA and SMA (specific mixing ability) was established. Results of a simulation study showed that an incomplete factorial design combines advantages of two commonly used full factorials, and enables to estimate GMA, SMA, and their variances in a resource-efficient way. This model was extended to the Producer (Pr) and Associate (As) concept to exploit additional information based on fraction yields. It was shown that the Pr/As concept allows to characterize genotypes for their contribution to total mixture yield, and, when relating to plant traits, allows to describe biological interaction functions (BIF) in a mixed crop. Incomplete factorial designs show the potential to drastically improve genetic gain by testing an increased number of genotypes using the same amount of resources. The Pr/As concept can further be employed to maximize GMA in an informed and efficient way. The BIF of a trait can be used to optimize species ratios at harvest as well as to extend our understanding of competitive and facilitative interactions in a mixed plant community. This study provides an integrative methodological framework to promote breeding for mixed cropping. International audience
Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2021Full-Text: http://europepmc.org/articles/PMC7829252Data sources: PubMed CentralZENODO; Frontiers in Plant ScienceOther literature type . Article . 2021 . Peer-reviewedLicense: CC BYHAL Descartes; Mémoires en Sciences de l'Information et de la Communication; Hal-DiderotArticle . 2021License: CC BYFull-Text: https://hal.inrae.fr/hal-03317725/documentadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fpls.2020.620400&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 26 citations 26 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2021Full-Text: http://europepmc.org/articles/PMC7829252Data sources: PubMed CentralZENODO; Frontiers in Plant ScienceOther literature type . Article . 2021 . Peer-reviewedLicense: CC BYHAL Descartes; Mémoires en Sciences de l'Information et de la Communication; Hal-DiderotArticle . 2021License: CC BYFull-Text: https://hal.inrae.fr/hal-03317725/documentadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fpls.2020.620400&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2020 EnglishPublisher:Frontiers Media S.A. Funded by:EC | ARRAINAEC| ARRAINAStephane Panserat; Elisabeth Plagnes-Juan; Elsa Gazzola; Mariana Palma; Leonardo J. Magnoni; Lucie Marandel; Ivan Viegas; Ivan Viegas;Glycerol metabolism in rainbow trout is poorly studied even though it is at the interface between lipid and glucose metabolism. Moreover, glycerol can be an important ingredient in new aquafeed formulation to decrease the catabolism of dietary amino acids. Thus, the present study aimed to characterize for the first time the different genes coding for key enzymes and proteins involved in hepatic glycerol metabolism. From the trout genomes, all the paralogous genes coding for glycerol transport (aqp9b), glycerol kinase (gk2a and gk5), glycerol-3-phosphate phosphatase (pgp), and glycerol-3-phosphate dehydrogenase (gpd1a, gpd1b, and gpd1c) were identified. The ontogenesis determined that the capacity to metabolize glycerol begins with the apparition of the liver during the development (stage 22) and are more expressed at the endogenous–exogenous feeding period (stage 35). The postprandial regulation of the expression of these genes in juvenile trout showed that the postprandial peak of expression is between 4 and 24 h after the last meal for many of the genes, demonstrating that glycerol metabolism could be nutritionally regulated at a molecular level. However, surprisingly, no regulation of the mRNA abundance for the glycerol metabolism-related genes by different levels of dietary glycerol (0, 2.5, and 5%) have been detected, showing that hepatic glycerol metabolism is poorly regulated at a molecular level by dietary glycerol in rainbow trout juveniles.
All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=doajarticles::31a33ab1bccbd3982d93a4cb7a2bc78a&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=doajarticles::31a33ab1bccbd3982d93a4cb7a2bc78a&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2020 Italy, United KingdomPublisher:Frontiers Media SA Funded by:ANR | Tiptree, EC | GenTreeANR| Tiptree ,EC| GenTreeAlma Piermattei; Georg von Arx; Camilla Avanzi; Camilla Avanzi; Patrick Fonti; Holger Gärtner; Andrea Piotti; Carlo Urbinati; Giovanni Giuseppe Vendramin; Ulf Büntgen; Ulf Büntgen; Ulf Büntgen; Ulf Büntgen; Alan Crivellaro;pmc: PMC7266088
pmid: 32528514
The quantitative assessment of wood anatomical traits offers important insights into those factors that shape tree growth. While it is known that conduit diameter, cell wall thickness, and wood density vary substantially between and within species, the interconnection between wood anatomical traits, tree-ring width, tree height and age, as well as environment effects on wood anatomy remain unclear. Here, we measure and derived 65 wood anatomical traits in cross-sections of the five outermost tree rings (2008-2012) of 30 Norway spruce [Picea abies (L.) H. Karst.] trees growing along an altitudinal gradient (1,400-1,750 m a.s.l.) in the northern Apennines (Italy). We assess the relationship among each anatomical trait and between anatomical trait groups according to their function for (i) tree-ring growth, (ii) cell growth, (iii) hydraulic traits, and (iv) mechanical traits. The results show that tree height significantly affects wood hydraulic traits, as well as number and tangential diameter of tracheids, and ultimately the total ring width. Moreover, the amount of earlywood and latewood percentage influence wood hydraulic safety and efficiency, as well as mechanical traits. Mechanically relevant wood anatomical traits are mainly influenced by tree age, not necessarily correlated with tree height. An additional level of complexity is also indicated by some anatomical traits, such as latewood lumen diameter and the cell wall reinforcement index, showing large inter-annual variation as a proxy of phenotypic plasticity. This study unravels the complex interconnection of tree-ring tracheid structure and identifies anatomical traits showing a large inter-individual variation and a strong interannual coherency. Knowing and quantifying anatomical variation in cells of plant stem is crucial in ecological and biological studies for an appropriate interpretation of abiotic drivers of wood formation often related to tree height and/or tree age.
Frontiers in Plant S... arrow_drop_down Frontiers in Plant ScienceArticle . 2020Full-Text: http://europepmc.org/articles/PMC7266088Data sources: PubMed Centraladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fpls.2020.00683&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 25 citations 25 popularity Top 10% influence Average impulse Top 10% Powered by BIP!visibility 4visibility views 4 download downloads 74 Powered bymore_vert Frontiers in Plant S... arrow_drop_down Frontiers in Plant ScienceArticle . 2020Full-Text: http://europepmc.org/articles/PMC7266088Data sources: PubMed Centraladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fpls.2020.00683&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2020 Belgium, United Kingdom, Austria, Denmark, Spain, Spain, Netherlands, BelgiumPublisher:Springer Science and Business Media LLC Funded by:EC | OpenAIRE-Advance, EC | COLOSSUS, EC | openMedicine +43 projectsEC| OpenAIRE-Advance ,EC| COLOSSUS ,EC| openMedicine ,EC| COMPARE ,EC| AETIONOMY ,EC| HBP SGA1 ,EC| MIDAS ,EC| PREPARE ,EC| SYSCID ,EC| CONNECARE ,EC| MyPeBS ,EC| SysMedPD ,EC| REGIONS4PERMED ,EC| ERA PerMed ,EC| ECRIN-IA ,EC| CREACTIVE ,EC| VPH-SHARE ,EC| B-CAST ,EC| DEFORM ,EC| eInfraCentral ,EC| PANCARESURFUP ,EC| EurValve ,EC| EuroPOND ,EC| ImpleMentAll ,EC| ANTI-SUPERBUGS PCP ,EC| SPIDIA4P ,EC| U-BIOPRED ,EC| EMIF ,EC| E-COMPARED ,EC| INSTRUCT-ULTRA ,EC| CECM ,EC| Solve-RD ,EC| PIONEER ,EC| MultipleMS ,EC| ELIXIR-EXCELERATE ,EC| SYSCOL ,EC| ELIXIR ,EC| SYSCLAD ,EC| ICT4DEPRESSION ,EC| HBP SGA2 ,EC| MEDALL ,EC| EHR4CR ,EC| CASYM ,EC| MedBioinformatics ,EC| ETRIKS ,EC| CENTER-TBIAarestrup, F. M.; Albeyatti, A.; Armitage, W. J.; Auffray, C.; Augello, L.; Balling, R.; Benhabiles, N.; Bertolini, G.; Bjaalie, J. G.; Black, M.; Blomberg, N.; Bogaert, P.; Bubak, M.; Claerhout, B.; Clarke, L.; De Meulder, B.; D’Errico, G.; Di Meglio, A.; Forgo, N.; Gans-Combe, C.; Gray, A. E.; Gut, I.; Gyllenberg, A.; Hemmrich-Stanisak, G.; Hjorth, L.; Ioannidis, Y.; Jarmalaite, S.; Kel, A.; Kherif, F.; Korbel, J. O.; Larue, C.; Laszlo, M.; Maas, A.; Magalhaes, L.; Manneh-Vangramberen, I.; Morley-Fletcher, E.; Ohmann, C.; Oksvold, P.; Oxtoby, N. P.; Perseil, I.; Pezoulas, V.; Riess, O.; Riper, H.; Roca, J.; Rosenstiel, P.; Sabatier, P.; Sanz, F.; Tayeb, M.; Thomassen, G.; Van Bussel, J.; Van den Bulcke, M.; Van Oyen, H.;pmc: PMC7029532
pmid: 32075696
The workshop participants received funding from the European Union Seventh Program for Research, Technological Development and Demonstration (FP7) and Horizon Research and Innovation Program (H2020) and other European Union programs under the following grant agreements: AETIONOMY (Developing an Aetiology-based Taxonomy of Human Disease—Approaches to Develop a New Taxonomy for Neurological Disorders, IMI-no115568), ANTI-SUPERBUG PCP (ANTISUPERBUG Precommercial Procurement, H2020-no688878), B-CAST (Breast CAncer Stratification understanding the determinants of risk and prognosis of molecular sub-types, H2020-no633784), BRIDGE Health (Bridging information and data generation for evidence-based health policy and research, H2020-no664691), CASyM (Coordinating Action Systems Medicine—Implementation of Systems Medicine across Europe, FP7-n°305033), CENTER-TBI (Collaborative European NeuroTrauma Effectiveness Research in TBI, FP7-no602150), CECM (Centre for New Methods in Computational Diagnostics and Personalized Therapy, H2020-no763734), COLOSSUS (Advancing a Precision Medicine Paradigm in Metastatic Colorectal Cancer: Systems based patient stratification solutions, H2020-no754923), COMPARE (COllaborative Management Platform for detection and Analyses of (Re-)emerging and foodborne outbreaks in Europe, H2020-no643476), CONNECARE (Personalized Connected Care for Complex Chronic Patients, H2020-no689802), CREATIVE (Collaborative REsearch on ACute Traumatic brain Injury in intensiVe care medicine in Europe, FP7-no602714), DEFORM (Define the global and financial impact of research misconduct H2020-no710246), ECCTR (European Cornea and Cell Transplant Registry, FP7-n°709723), E-COMPARED (European COMPARative Effectiveness Research on online Depression, FP7-no603098), ECRIN-IA (European Clinical Research Infrastructures Network- Integrating Activity, FP7-no284395), EHR4CR (Electronic Health Records Systems for Clinical Research, IMI-no115189) eInfraCentral (European E-infrastructures Services Gateway, H2020-no731049), ELIXIR (European Life-science Infrastructure for Biological Information, FP7-n°211601), ELIXIR-EXCELERATE (Fast track ELIXIR implementation and drive early user exploitation across the life sciences, H2020-no676559), eMEN (e-mental health innovation and transnational implementation platform North West Europe, H2020), EMIF (European Medical Information Framework, IMI-no115372), ERA PerMed (ERA-net Cofund in Personalized Medicine, H2020-no779282), eTRIKS (Delivering European Translational Information and Knowledge Management Services, IMI-1-no115446), EuroPOND (Data-driven models for progression of neurological diseases, H2020-n°666992), EurValve (Personalized Decision Support for Heart Valve disease, H2020-no689617), HBP SGA1/SGA2 (Human Brain Project specific grant agreements, H2020-n°720270/785907), ICT4DEPRESSION (User-friendly ICT tools to enhance self-management and effective treatment of depression in the EU, FP7-n°248778), ImpleMentAll (Towards evidence-based tailored implementation strategies for eHealth, H2020-no733025), INSTRUCT-ULTRA (Releasing the full potential of instruct to expand and consolidate infrastructure services for integrated structural life sciences research, H2020-no731005), MASTERMIND (Management of Mental Disorders through Advanced Technologies, CIP-no621000), MeDALL (Mechanisms of the Development of ALLergy, FP7-n°261357), MedBioinformatics (Creating medically-driven integrative bioinformatics applications focused on oncology, CNS disorders and their comorbidities, H2020-n°634143), MIDAS (Meaningful Integration of Data, Analytics and Services, H2020-no727721), MultipleMS (Multiple manifestations of genetic and non-genetic factors in Multiple Sclerosis disentangled with a multi-omics approach to accelerate personalized medicine, H2020-no733161), myPEBS (Randomized Comparison Of Risk-Stratified versus Standard Breast Cancer Screening European Women Aged 40–74, H2020-no755394), OpenAIRE-Advance (Advancing Open Scholarship, H2020-no777541), OpenMedicine (OpenMedicine, H2020-n°643796), PanCareSurFup (PanCare Childhood and Adolescent Cancer Survival Care and Follow-up Studies, FP7-n°257505), PIONEER (Prostate Cancer DIagnOsis and TreatmeNt Enhancement through the Power of Big Data in EuRope, H2020-IMI-2-n°777492), PREPARE (Platform for European Preparedness Against (Re-)emerging Epidemics, FP7-n°602525), Regions4PerMed (Interregional coordination for a deep and fast uptake of personalized health, H2020-no825812), RD-CONNECT (An integrated platform connecting registries, biobanks and clinical bioinformatics for rare disease research, FP7-no305344), Solve-RD (Solving the unsolved Rare Diseases, H2020-no779257), SPIDIA4P (SPIDIA for Personalized Medicine-Standardization of generic Pre-analytical procedures for In-vitro DIAgnostics for Personalized Medicine, H2020-no733112), SYSCID (A Systems medicine approach to chronic inflammatory disease, H2020-no733100), SysCLAD (Systems prediction of Chronic Allograft Dysfunction, FP7-n°305457), SYSCOL (Systems Biology of Colorectal Cancer, FP7-no258236), SysMedPD (Systems Medicine of Mitochondrial Parkinson’s Disease, H2020-n°668738), U-BIOPRED (Unbiased BIOmarkers for the PREDiction of respiratory disease outcomes, IMI-n°115010), VPH-share (Virtual Physiological Human: Sharing for Healthcare—A Research Environment, FP7-n°269978). The European Union (EU) initiative on the Digital Transformation of Health and Care (Digicare) aims to provide the conditions necessary for building a secure, flexible, and decentralized digital health infrastructure. Creating a European Health Research and Innovation Cloud (HRIC) within this environment should enable data sharing and analysis for health research across the EU, in compliance with data protection legislation while preserving the full trust of the participants. Such a HRIC should learn from and build on existing data infrastructures, integrate best practices, and focus on the concrete needs of the community in terms of technologies, governance, management, regulation, and ethics requirements. Here, we describe the vision and expected benefits of digital data sharing in health research activities and present a roadmap that fosters the opportunities while answering the challenges of implementing a HRIC. For this, we put forward five specific recommendations and action points to ensure that a European HRIC: i) is built on established standards and guidelines, providing cloud technologies through an open and decentralized infrastructure; ii) is developed and certified to the highest standards of interoperability and data security that can be trusted by all stakeholders; iii) is supported by a robust ethical and legal framework that is compliant with the EU General Data Protection Regulation (GDPR); iv) establishes a proper environment for the training of new generations of data and medical scientists; and v) stimulates research and innovation in transnational collaborations through public and private initiatives and partnerships funded by the EU through Horizon 2020 and Horizon Europe.
Recolector de Cienci... arrow_drop_down Recolector de Ciencia Abierta, RECOLECTA; Diposit Digital de la Universitat de BarcelonaArticle . 2020 . 2023License: CC BYFull-Text: https://doi.org/10.1186/s13073-020-0713-zEurope PubMed CentralArticle . 2020Full-Text: http://europepmc.org/articles/PMC7029532Data sources: PubMed CentralZENODO; UPF Digital Repository; Permanent Hosting, Archiving and Indexing of Digital Resources and Assets; Genome Medicine; Norwegian Open Research ArchivesOther literature type . Article . 2020 . Peer-reviewedLicense: CC BYGhent University Academic BibliographyArticle . 2020Data sources: Ghent University Academic BibliographyInstitutional Repository Universiteit AntwerpenArticle . 2020Data sources: Institutional Repository Universiteit AntwerpenServeur académique lausannoisArticle . 2020License: CC BYData sources: Serveur académique lausannoisOnline Research Database In TechnologyArticle . 2020Data sources: Online Research Database In Technologyadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1186/s13073-020-0713-z&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 35 citations 35 popularity Top 10% influence Top 10% impulse Top 10% Powered by BIP!visibility 91visibility views 91 download downloads 35 Powered bymore_vert Recolector de Cienci... arrow_drop_down Recolector de Ciencia Abierta, RECOLECTA; Diposit Digital de la Universitat de BarcelonaArticle . 2020 . 2023License: CC BYFull-Text: https://doi.org/10.1186/s13073-020-0713-zEurope PubMed CentralArticle . 2020Full-Text: http://europepmc.org/articles/PMC7029532Data sources: PubMed CentralZENODO; UPF Digital Repository; Permanent Hosting, Archiving and Indexing of Digital Resources and Assets; Genome Medicine; Norwegian Open Research ArchivesOther literature type . Article . 2020 . Peer-reviewedLicense: CC BYGhent University Academic BibliographyArticle . 2020Data sources: Ghent University Academic BibliographyInstitutional Repository Universiteit AntwerpenArticle . 2020Data sources: Institutional Repository Universiteit AntwerpenServeur académique lausannoisArticle . 2020License: CC BYData sources: Serveur académique lausannoisOnline Research Database In TechnologyArticle . 2020Data sources: Online Research Database In Technologyadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1186/s13073-020-0713-z&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2019 FrancePublisher:Frontiers Media SA Funded by:EC | XF-ACTORSEC| XF-ACTORSEnora Dupas; Enora Dupas; Martial Briand; Marie-Agnès Jacques; Sophie Cesbron;International audience; Xylella fastidiosa (Xf) is an insect-borne bacterium confined to the xylem vessels of plants. This plant pathogen has a broad host range estimated to 560 plant species. Five subspecies of the pathogen with different but overlapping host ranges have been described, but only three subspecies are widely accepted, namely subspecies fastidiosa, multiplex, and pauca. Initially limited to the Americas, Xf has been detected in Europe since 2013. As management of X. fastidiosa outbreaks in Europe depends on the identification of the subspecies, accurate determination of the subspecies in infected plants as early as possible is of major interest. Thus, we developed various tetraplex and triplex quantitative PCR (qPCR) assays for X. fastidiosa detection and subspecies identification in planta in a single reaction. We designed primers and probes using SkIf, a bioinformatics tool based on k-mers, to detect specific signatures of the species and subspecies from a data set of 58 genome sequences representative of X. fastidiosa diversity. We tested the qPCR assays on 39 target and 30 non-target strains, as well as on 13 different plant species spiked with strains of the different subspecies of X. fastidiosa, and on samples from various environmental and inoculated host plants. Sensitivity of simplex assays was equal or slightly better than the reference protocol on purified DNA. Tetraplex qPCR assays had the same sensitivity than the reference protocol and allowed X. fastidiosa detection in all spiked matrices up to 10(3) cells.ml(-1). Moreover, mix infections of two to three subspecies could be detected in the same sample with tetraplex assays. In environmental plant samples, the tetraplex qPCR assays allowed subspecies identification when the current method based on multilocus sequence typing failed. The qPCR assays described here are robust and modular tools that are efficient for differentiating X. fastidiosa subspecies directly in plant samples
Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2019Full-Text: http://europepmc.org/articles/PMC6951419Data sources: PubMed CentralMémoires en Sciences de l'Information et de la Communication; Hal-DiderotArticle . 2019License: CC BYFull-Text: https://hal.inrae.fr/hal-02624817/documentadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fpls.2019.01732&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess Routesgold 25 citations 25 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2019Full-Text: http://europepmc.org/articles/PMC6951419Data sources: PubMed CentralMémoires en Sciences de l'Information et de la Communication; Hal-DiderotArticle . 2019License: CC BYFull-Text: https://hal.inrae.fr/hal-02624817/documentadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fpls.2019.01732&type=result"></script>'); --> </script>
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description Publicationkeyboard_double_arrow_right Article 2021 FrancePublisher:Frontiers Media SA Funded by:EC | AquaNESEC| AquaNESMarc Crampon; Coralie Soulier; Pauline Sidoli; Jennifer Hellal; Catherine Joulian; Mickaël Charron; Quentin Guillemoto; Quentin Guillemoto; Géraldine Picot-Colbeaux; Marie Pettenati;The demand for energy and chemicals is constantly growing, leading to an increase of the amounts of contaminants discharged to the environment. Among these, pharmaceutical molecules are frequently found in treated wastewater that is discharged into superficial waters. Indeed, wastewater treatment plants (WWTPs) are designed to remove organic pollution from urban effluents but are not specific, especially toward contaminants of emerging concern (CECs), which finally reach the natural environment. In this context, it is important to study the fate of micropollutants, especially in a soil aquifer treatment (SAT) context for water from WWTPs, and for the most persistent molecules such as benzodiazepines. In the present study, soils sampled in a reed bed frequently flooded by water from a WWTP were spiked with diazepam and oxazepam in microcosms, and their concentrations were monitored for 97 days. It appeared that the two molecules were completely degraded after 15 days of incubation. Samples were collected during the experiment in order to follow the dynamics of the microbial communities, based on 16S rRNA gene sequencing for Archaea and Bacteria, and ITS2 gene for Fungi. The evolution of diversity and of specific operating taxonomic units (OTUs) highlighted an impact of the addition of benzodiazepines, a rapid resilience of the fungal community and an evolution of the bacterial community. It appeared that OTUs from the Brevibacillus genus were more abundant at the beginning of the biodegradation process, for diazepam and oxazepam conditions. Additionally, Tax4Fun tool was applied to 16S rRNA gene sequencing data to infer on the evolution of specific metabolic functions during biodegradation. It finally appeared that the microbial community in soils frequently exposed to water from WWTP, potentially containing CECs such as diazepam and oxazepam, may be adapted to the degradation of persistent contaminants.
Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2021Full-Text: http://europepmc.org/articles/PMC8667618Data sources: PubMed Centraladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fmicb.2021.742000&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 4 citations 4 popularity Top 10% influence Average impulse Average Powered by BIP!more_vert Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2021Full-Text: http://europepmc.org/articles/PMC8667618Data sources: PubMed Centraladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fmicb.2021.742000&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2021 FrancePublisher:MDPI AG Funded by:EC | IMAGE, EC | GEMexEC| IMAGE ,EC| GEMexDavid Escobedo; Patricia Patrier; Daniel Beaufort; Benoit Gibert; Léa Lévy; Nathaniel Findling; Annette Mortensen;doi: 10.3390/min11090935
This paper revisits the clay mineralogy of the “smectite” alteration zone in the Krafla geo-thermal field via the study of an exploratory well in which temperatures range from 40 °C to 215 °C. The clay alteration consists of several mineral assemblages superimposed in time and space, resulting from different stages of water-rock interaction. Trioctahedral clay minerals (chlorite, corrensite and smectite) are observed throughout the studied section. These minerals can form in nearly closed systems as replacements of groundmass minerals/glass after interactions with resident and nearly stagnant fluids not far from chemical equilibrium (neutral to basic pH conditions) or from direct precipitation from geothermal fluids. They are locally superimposed by Al clay phases (smectite, illite/smectite and kaolinite), which result from intense leaching of the host rocks due to their interaction with low pH fluids under strong W/R ratios. The absence of mineralogical zoning is explained by the fact that hydrothermal alteration is strongly dependent on very recent hydrodynamics. The current fluid circulation generates trioctahedral clays at depth that cannot be distinguished from pervasive earlier alteration. The only easily detectable signature of current activity and the most relevant signature for geothermal exploration is the presence of Al dioctahedral phases since it indicates leaching and intense hydrothermal activity. International audience
Minerals arrow_drop_down MineralsOther literature type . Article . 2021 . Peer-reviewedLicense: CC BYFull-Text: http://www.mdpi.com/2075-163X/11/9/935/pdfMémoires en Sciences de l'Information et de la Communication; HAL-IRDArticle . 2021License: CC BYFull-Text: https://hal.science/hal-03402731/documentadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3390/min11090935&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess Routesgold 2 citations 2 popularity Average influence Average impulse Average Powered by BIP!more_vert Minerals arrow_drop_down MineralsOther literature type . Article . 2021 . Peer-reviewedLicense: CC BYFull-Text: http://www.mdpi.com/2075-163X/11/9/935/pdfMémoires en Sciences de l'Information et de la Communication; HAL-IRDArticle . 2021License: CC BYFull-Text: https://hal.science/hal-03402731/documentadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3390/min11090935&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2021 France, ItalyPublisher:Frontiers Media SA Funded by:EC | COMPAREEC| COMPARECadel-Six, Sabrina; Cherchame, Emeline; Douarre, Pierre-Emmanuel; Tang, Yue; Felten, Arnaud; Barbet, Pauline; Litrup, Eva; Banerji, Sangeeta; Simon, Sandra; Pasquali, Federique; Gourmelon, Michèle; Mensah, Nana; Borowiak, Maria; Mistou, Michel-Yves; Petrovska, Liljana;The European epidemic monophasic variant of Salmonella enterica serovar Typhimurium ( S . 1 ,4,[5],12:i:-) characterized by the multi locus sequence type ST34 and the antimicrobial resistance ASSuT profile has become one of the most common serovars in Europe (EU) and the United States (US). In this study, we reconstructed the time-scaled phylogeny and evolution of this Salmonella in Europe. The epidemic S . 1 ,4,[5],12:i:- ST34 emerged in the 1980s by an acquisition of the Salmonella Genomic Island (SGI)-4 at the 3′ end of the phenylalanine phe tRNA locus conferring resistance to copper and arsenic toxicity. Subsequent integration of the Tn21 transposon into the fljAB locus gave resistance to mercury toxicity and several classes of antibiotics used in food-producing animals (ASSuT profile). The second step of the evolution occurred in the 1990s, with the integration of mTmV and mTmV-like prophages carrying the perC and/or sopE genes involved in the ability to reduce nitrates in intestinal contents and facilitate the disruption of the junctions of the host intestinal epithelial cells. Heavy metals are largely used as food supplements or pesticide for cultivation of seeds intended for animal feed so the expansion of the epidemic S. 1,4,[5],12:i:- ST34 was strongly related to the multiple-heavy metal resistance acquired by transposons, integrative and conjugative elements and facilitated by the escape until 2011 from the regulatory actions applied in the control of S. Typhimurium in Europe. The genomic plasticity of the epidemic S. 1,4,[5],12:i:- was demonstrated in our study by the analysis of the plasmidome. We were able to identify plasmids harboring genes mediating resistance to phenicols, colistin, and fluoroquinolone and also describe for the first time in six of the analyzed genomes the presence of two plasmids (pERR1744967-1 and pERR2174855-2) previously described only in strains of enterotoxigenic Escherichia coli and E. fergusonii . International audience
Frontiers in Microbi... arrow_drop_down Frontiers in Microbiology; Archivio istituzionale della ricerca - Alma Mater Studiorum Università di BolognaArticle . 2021 . Peer-reviewedLicense: CC BYEurope PubMed CentralArticle . 2021Full-Text: http://europepmc.org/articles/PMC8175864Data sources: PubMed CentralArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of IfremerArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of IfremerHAL Descartes; Mémoires en Sciences de l'Information et de la CommunicationArticle . 2021License: CC BYHAL Descartes; Mémoires en Sciences de l'Information et de la Communication; HAL AMUArticle . 2021License: CC BYadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fmicb.2021.651124&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess Routesgold 19 citations 19 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert Frontiers in Microbi... arrow_drop_down Frontiers in Microbiology; Archivio istituzionale della ricerca - Alma Mater Studiorum Università di BolognaArticle . 2021 . Peer-reviewedLicense: CC BYEurope PubMed CentralArticle . 2021Full-Text: http://europepmc.org/articles/PMC8175864Data sources: PubMed CentralArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of IfremerArchiMer - Institutional Archive of IfremerOther literature type . 2021Data sources: ArchiMer - Institutional Archive of IfremerHAL Descartes; Mémoires en Sciences de l'Information et de la CommunicationArticle . 2021License: CC BYHAL Descartes; Mémoires en Sciences de l'Information et de la Communication; HAL AMUArticle . 2021License: CC BYadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fmicb.2021.651124&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2021 Portugal, FrancePublisher:Elsevier BV Funded by:EC | ERA4CSEC| ERA4CSSimoes, Sofia; Amorim, Filipa; Siggini, Gildas; Sessa, Valentina; Saint-Drenan, Yves-Marie; Carvalho, Sílvia; Mraihi, Hamza; Assoumou, Edi;handle: 10451/49278
Abstract Climate and weather conditions influence energy demand. as well as electricity generation, especially due to the strong development of renewable energy. The changes of the European energy mix, together with ongoing climate change, raise a number of questions on impact on the electricity sector. In this paper we present results for the whole of the European power sector regarding on how considering current and future climate variability affects the results of a TIMES energy system model for the whole European power sector (eTIMES-EU) up to 2050. For each member-state we consider six climate projections to generate future capacity factors for wind, solar and hydro power generation. as well as temperature impact on electricity demand for heating and cooling. These are input into the eTIMES-EU model to assess how climate affects the optimal operation of the power system and if current EU-wide RES and emissions target deployment may be affected. Results show that although at EU-wide level there are no substantial changes, there are significant differences in countries RES deployment (especially wind and solar) and in electricity trade.
DOAJ arrow_drop_down LAReferencia - Red Federada de Repositorios Institucionales de Publicaciones Científicas Latinoamericanas; Energy Strategy ReviewsArticle . 2021 . Peer-reviewedLicense: CC BY NC NDUniversidade de Lisboa: Repositório.ULArticle . 2021License: CC BY NC NDData sources: Universidade de Lisboa: Repositório.ULadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.esr.2021.100657&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 22 citations 22 popularity Top 10% influence Top 10% impulse Top 10% Powered by BIP!visibility 39visibility views 39 download downloads 75 Powered bymore_vert DOAJ arrow_drop_down LAReferencia - Red Federada de Repositorios Institucionales de Publicaciones Científicas Latinoamericanas; Energy Strategy ReviewsArticle . 2021 . Peer-reviewedLicense: CC BY NC NDUniversidade de Lisboa: Repositório.ULArticle . 2021License: CC BY NC NDData sources: Universidade de Lisboa: Repositório.ULadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.esr.2021.100657&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2021 FrancePublisher:MDPI AG Funded by:EC | AgriLinkEC| AgriLinkAuthors: Polita, Fabiola; Madureira, Livia;Polita, Fabiola; Madureira, Livia;The Multi-Level Perspective (MLP) is an analytical framework developed to explain transitions towards sustainability. This article aims to contribute to enhancing the use of the MLP to understand the transitions towards sustainability in agriculture. We propose that MLP is an insightful framework to capture particular micro-level trajectories of adopting innovations. The Douro wine region in Northern Portugal, known worldwide for the wines that are produced there, was the study area of our empirical research. This region has become the stage for developing a complex agroecological innovation, the Ecological Infrastructures (EIs). These consist of a combination of techniques that aim to expand the ecosystem services of the vineyards. The uniqueness of its development at the farm level originates a multiplicity of innovation trajectories, which are the focus of this study. Content analysis of 20 interviews with winegrowers was performed, and the results were analysed through the MLP framework. This allowed us to conclude that a process of transition towards the sustainability of region-level winegrowing is underway, and that it can be explained by the overlapping of different paths of adopting innovation. Our research shows that in-depth analysis of qualitative data, done through content analysis, can be used to amplify the insightfulness of MLP by enabling it to uncover the microscale transition pathways that shape uneven region-level transitions. International audience
Land arrow_drop_down LandOther literature type . Article . 2021 . Peer-reviewedLicense: CC BYFull-Text: https://www.mdpi.com/2073-445X/10/3/322/pdfadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3390/land10030322&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 2 citations 2 popularity Average influence Average impulse Average Powered by BIP!visibility 13visibility views 13 download downloads 26 Powered bymore_vert Land arrow_drop_down LandOther literature type . Article . 2021 . Peer-reviewedLicense: CC BYFull-Text: https://www.mdpi.com/2073-445X/10/3/322/pdfadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3390/land10030322&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2021 FrancePublisher:Frontiers Media SA Funded by:EC | ReMIXEC| ReMIXBenedikt Haug; Benedikt Haug; Monika M. Messmer; Jérôme Enjalbert; Isabelle Goldringer; Emma Forst; Timothée Flutre; Tristan Mary-Huard; Tristan Mary-Huard; Pierre Hohmann;Mixed cropping has been suggested as a resource-efficient approach to meet high produce demands while maintaining biodiversity and minimizing environmental impact. Current breeding programs do not select for enhanced general mixing ability (GMA) and neglect biological interactions within species mixtures. Clear concepts and efficient experimental designs, adapted to breeding for mixed cropping and encoded into appropriate statistical models, are lacking. Thus, a model framework for GMA and SMA (specific mixing ability) was established. Results of a simulation study showed that an incomplete factorial design combines advantages of two commonly used full factorials, and enables to estimate GMA, SMA, and their variances in a resource-efficient way. This model was extended to the Producer (Pr) and Associate (As) concept to exploit additional information based on fraction yields. It was shown that the Pr/As concept allows to characterize genotypes for their contribution to total mixture yield, and, when relating to plant traits, allows to describe biological interaction functions (BIF) in a mixed crop. Incomplete factorial designs show the potential to drastically improve genetic gain by testing an increased number of genotypes using the same amount of resources. The Pr/As concept can further be employed to maximize GMA in an informed and efficient way. The BIF of a trait can be used to optimize species ratios at harvest as well as to extend our understanding of competitive and facilitative interactions in a mixed plant community. This study provides an integrative methodological framework to promote breeding for mixed cropping. International audience
Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2021Full-Text: http://europepmc.org/articles/PMC7829252Data sources: PubMed CentralZENODO; Frontiers in Plant ScienceOther literature type . Article . 2021 . Peer-reviewedLicense: CC BYHAL Descartes; Mémoires en Sciences de l'Information et de la Communication; Hal-DiderotArticle . 2021License: CC BYFull-Text: https://hal.inrae.fr/hal-03317725/documentadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fpls.2020.620400&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 26 citations 26 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2021Full-Text: http://europepmc.org/articles/PMC7829252Data sources: PubMed CentralZENODO; Frontiers in Plant ScienceOther literature type . Article . 2021 . Peer-reviewedLicense: CC BYHAL Descartes; Mémoires en Sciences de l'Information et de la Communication; Hal-DiderotArticle . 2021License: CC BYFull-Text: https://hal.inrae.fr/hal-03317725/documentadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fpls.2020.620400&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2020 EnglishPublisher:Frontiers Media S.A. Funded by:EC | ARRAINAEC| ARRAINAStephane Panserat; Elisabeth Plagnes-Juan; Elsa Gazzola; Mariana Palma; Leonardo J. Magnoni; Lucie Marandel; Ivan Viegas; Ivan Viegas;Glycerol metabolism in rainbow trout is poorly studied even though it is at the interface between lipid and glucose metabolism. Moreover, glycerol can be an important ingredient in new aquafeed formulation to decrease the catabolism of dietary amino acids. Thus, the present study aimed to characterize for the first time the different genes coding for key enzymes and proteins involved in hepatic glycerol metabolism. From the trout genomes, all the paralogous genes coding for glycerol transport (aqp9b), glycerol kinase (gk2a and gk5), glycerol-3-phosphate phosphatase (pgp), and glycerol-3-phosphate dehydrogenase (gpd1a, gpd1b, and gpd1c) were identified. The ontogenesis determined that the capacity to metabolize glycerol begins with the apparition of the liver during the development (stage 22) and are more expressed at the endogenous–exogenous feeding period (stage 35). The postprandial regulation of the expression of these genes in juvenile trout showed that the postprandial peak of expression is between 4 and 24 h after the last meal for many of the genes, demonstrating that glycerol metabolism could be nutritionally regulated at a molecular level. However, surprisingly, no regulation of the mRNA abundance for the glycerol metabolism-related genes by different levels of dietary glycerol (0, 2.5, and 5%) have been detected, showing that hepatic glycerol metabolism is poorly regulated at a molecular level by dietary glycerol in rainbow trout juveniles.
All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=doajarticles::31a33ab1bccbd3982d93a4cb7a2bc78a&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=doajarticles::31a33ab1bccbd3982d93a4cb7a2bc78a&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2020 Italy, United KingdomPublisher:Frontiers Media SA Funded by:ANR | Tiptree, EC | GenTreeANR| Tiptree ,EC| GenTreeAlma Piermattei; Georg von Arx; Camilla Avanzi; Camilla Avanzi; Patrick Fonti; Holger Gärtner; Andrea Piotti; Carlo Urbinati; Giovanni Giuseppe Vendramin; Ulf Büntgen; Ulf Büntgen; Ulf Büntgen; Ulf Büntgen; Alan Crivellaro;pmc: PMC7266088
pmid: 32528514
The quantitative assessment of wood anatomical traits offers important insights into those factors that shape tree growth. While it is known that conduit diameter, cell wall thickness, and wood density vary substantially between and within species, the interconnection between wood anatomical traits, tree-ring width, tree height and age, as well as environment effects on wood anatomy remain unclear. Here, we measure and derived 65 wood anatomical traits in cross-sections of the five outermost tree rings (2008-2012) of 30 Norway spruce [Picea abies (L.) H. Karst.] trees growing along an altitudinal gradient (1,400-1,750 m a.s.l.) in the northern Apennines (Italy). We assess the relationship among each anatomical trait and between anatomical trait groups according to their function for (i) tree-ring growth, (ii) cell growth, (iii) hydraulic traits, and (iv) mechanical traits. The results show that tree height significantly affects wood hydraulic traits, as well as number and tangential diameter of tracheids, and ultimately the total ring width. Moreover, the amount of earlywood and latewood percentage influence wood hydraulic safety and efficiency, as well as mechanical traits. Mechanically relevant wood anatomical traits are mainly influenced by tree age, not necessarily correlated with tree height. An additional level of complexity is also indicated by some anatomical traits, such as latewood lumen diameter and the cell wall reinforcement index, showing large inter-annual variation as a proxy of phenotypic plasticity. This study unravels the complex interconnection of tree-ring tracheid structure and identifies anatomical traits showing a large inter-individual variation and a strong interannual coherency. Knowing and quantifying anatomical variation in cells of plant stem is crucial in ecological and biological studies for an appropriate interpretation of abiotic drivers of wood formation often related to tree height and/or tree age.
Frontiers in Plant S... arrow_drop_down Frontiers in Plant ScienceArticle . 2020Full-Text: http://europepmc.org/articles/PMC7266088Data sources: PubMed Centraladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fpls.2020.00683&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 25 citations 25 popularity Top 10% influence Average impulse Top 10% Powered by BIP!visibility 4visibility views 4 download downloads 74 Powered bymore_vert Frontiers in Plant S... arrow_drop_down Frontiers in Plant ScienceArticle . 2020Full-Text: http://europepmc.org/articles/PMC7266088Data sources: PubMed Centraladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fpls.2020.00683&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2020 Belgium, United Kingdom, Austria, Denmark, Spain, Spain, Netherlands, BelgiumPublisher:Springer Science and Business Media LLC Funded by:EC | OpenAIRE-Advance, EC | COLOSSUS, EC | openMedicine +43 projectsEC| OpenAIRE-Advance ,EC| COLOSSUS ,EC| openMedicine ,EC| COMPARE ,EC| AETIONOMY ,EC| HBP SGA1 ,EC| MIDAS ,EC| PREPARE ,EC| SYSCID ,EC| CONNECARE ,EC| MyPeBS ,EC| SysMedPD ,EC| REGIONS4PERMED ,EC| ERA PerMed ,EC| ECRIN-IA ,EC| CREACTIVE ,EC| VPH-SHARE ,EC| B-CAST ,EC| DEFORM ,EC| eInfraCentral ,EC| PANCARESURFUP ,EC| EurValve ,EC| EuroPOND ,EC| ImpleMentAll ,EC| ANTI-SUPERBUGS PCP ,EC| SPIDIA4P ,EC| U-BIOPRED ,EC| EMIF ,EC| E-COMPARED ,EC| INSTRUCT-ULTRA ,EC| CECM ,EC| Solve-RD ,EC| PIONEER ,EC| MultipleMS ,EC| ELIXIR-EXCELERATE ,EC| SYSCOL ,EC| ELIXIR ,EC| SYSCLAD ,EC| ICT4DEPRESSION ,EC| HBP SGA2 ,EC| MEDALL ,EC| EHR4CR ,EC| CASYM ,EC| MedBioinformatics ,EC| ETRIKS ,EC| CENTER-TBIAarestrup, F. M.; Albeyatti, A.; Armitage, W. J.; Auffray, C.; Augello, L.; Balling, R.; Benhabiles, N.; Bertolini, G.; Bjaalie, J. G.; Black, M.; Blomberg, N.; Bogaert, P.; Bubak, M.; Claerhout, B.; Clarke, L.; De Meulder, B.; D’Errico, G.; Di Meglio, A.; Forgo, N.; Gans-Combe, C.; Gray, A. E.; Gut, I.; Gyllenberg, A.; Hemmrich-Stanisak, G.; Hjorth, L.; Ioannidis, Y.; Jarmalaite, S.; Kel, A.; Kherif, F.; Korbel, J. O.; Larue, C.; Laszlo, M.; Maas, A.; Magalhaes, L.; Manneh-Vangramberen, I.; Morley-Fletcher, E.; Ohmann, C.; Oksvold, P.; Oxtoby, N. P.; Perseil, I.; Pezoulas, V.; Riess, O.; Riper, H.; Roca, J.; Rosenstiel, P.; Sabatier, P.; Sanz, F.; Tayeb, M.; Thomassen, G.; Van Bussel, J.; Van den Bulcke, M.; Van Oyen, H.;pmc: PMC7029532
pmid: 32075696
The workshop participants received funding from the European Union Seventh Program for Research, Technological Development and Demonstration (FP7) and Horizon Research and Innovation Program (H2020) and other European Union programs under the following grant agreements: AETIONOMY (Developing an Aetiology-based Taxonomy of Human Disease—Approaches to Develop a New Taxonomy for Neurological Disorders, IMI-no115568), ANTI-SUPERBUG PCP (ANTISUPERBUG Precommercial Procurement, H2020-no688878), B-CAST (Breast CAncer Stratification understanding the determinants of risk and prognosis of molecular sub-types, H2020-no633784), BRIDGE Health (Bridging information and data generation for evidence-based health policy and research, H2020-no664691), CASyM (Coordinating Action Systems Medicine—Implementation of Systems Medicine across Europe, FP7-n°305033), CENTER-TBI (Collaborative European NeuroTrauma Effectiveness Research in TBI, FP7-no602150), CECM (Centre for New Methods in Computational Diagnostics and Personalized Therapy, H2020-no763734), COLOSSUS (Advancing a Precision Medicine Paradigm in Metastatic Colorectal Cancer: Systems based patient stratification solutions, H2020-no754923), COMPARE (COllaborative Management Platform for detection and Analyses of (Re-)emerging and foodborne outbreaks in Europe, H2020-no643476), CONNECARE (Personalized Connected Care for Complex Chronic Patients, H2020-no689802), CREATIVE (Collaborative REsearch on ACute Traumatic brain Injury in intensiVe care medicine in Europe, FP7-no602714), DEFORM (Define the global and financial impact of research misconduct H2020-no710246), ECCTR (European Cornea and Cell Transplant Registry, FP7-n°709723), E-COMPARED (European COMPARative Effectiveness Research on online Depression, FP7-no603098), ECRIN-IA (European Clinical Research Infrastructures Network- Integrating Activity, FP7-no284395), EHR4CR (Electronic Health Records Systems for Clinical Research, IMI-no115189) eInfraCentral (European E-infrastructures Services Gateway, H2020-no731049), ELIXIR (European Life-science Infrastructure for Biological Information, FP7-n°211601), ELIXIR-EXCELERATE (Fast track ELIXIR implementation and drive early user exploitation across the life sciences, H2020-no676559), eMEN (e-mental health innovation and transnational implementation platform North West Europe, H2020), EMIF (European Medical Information Framework, IMI-no115372), ERA PerMed (ERA-net Cofund in Personalized Medicine, H2020-no779282), eTRIKS (Delivering European Translational Information and Knowledge Management Services, IMI-1-no115446), EuroPOND (Data-driven models for progression of neurological diseases, H2020-n°666992), EurValve (Personalized Decision Support for Heart Valve disease, H2020-no689617), HBP SGA1/SGA2 (Human Brain Project specific grant agreements, H2020-n°720270/785907), ICT4DEPRESSION (User-friendly ICT tools to enhance self-management and effective treatment of depression in the EU, FP7-n°248778), ImpleMentAll (Towards evidence-based tailored implementation strategies for eHealth, H2020-no733025), INSTRUCT-ULTRA (Releasing the full potential of instruct to expand and consolidate infrastructure services for integrated structural life sciences research, H2020-no731005), MASTERMIND (Management of Mental Disorders through Advanced Technologies, CIP-no621000), MeDALL (Mechanisms of the Development of ALLergy, FP7-n°261357), MedBioinformatics (Creating medically-driven integrative bioinformatics applications focused on oncology, CNS disorders and their comorbidities, H2020-n°634143), MIDAS (Meaningful Integration of Data, Analytics and Services, H2020-no727721), MultipleMS (Multiple manifestations of genetic and non-genetic factors in Multiple Sclerosis disentangled with a multi-omics approach to accelerate personalized medicine, H2020-no733161), myPEBS (Randomized Comparison Of Risk-Stratified versus Standard Breast Cancer Screening European Women Aged 40–74, H2020-no755394), OpenAIRE-Advance (Advancing Open Scholarship, H2020-no777541), OpenMedicine (OpenMedicine, H2020-n°643796), PanCareSurFup (PanCare Childhood and Adolescent Cancer Survival Care and Follow-up Studies, FP7-n°257505), PIONEER (Prostate Cancer DIagnOsis and TreatmeNt Enhancement through the Power of Big Data in EuRope, H2020-IMI-2-n°777492), PREPARE (Platform for European Preparedness Against (Re-)emerging Epidemics, FP7-n°602525), Regions4PerMed (Interregional coordination for a deep and fast uptake of personalized health, H2020-no825812), RD-CONNECT (An integrated platform connecting registries, biobanks and clinical bioinformatics for rare disease research, FP7-no305344), Solve-RD (Solving the unsolved Rare Diseases, H2020-no779257), SPIDIA4P (SPIDIA for Personalized Medicine-Standardization of generic Pre-analytical procedures for In-vitro DIAgnostics for Personalized Medicine, H2020-no733112), SYSCID (A Systems medicine approach to chronic inflammatory disease, H2020-no733100), SysCLAD (Systems prediction of Chronic Allograft Dysfunction, FP7-n°305457), SYSCOL (Systems Biology of Colorectal Cancer, FP7-no258236), SysMedPD (Systems Medicine of Mitochondrial Parkinson’s Disease, H2020-n°668738), U-BIOPRED (Unbiased BIOmarkers for the PREDiction of respiratory disease outcomes, IMI-n°115010), VPH-share (Virtual Physiological Human: Sharing for Healthcare—A Research Environment, FP7-n°269978). The European Union (EU) initiative on the Digital Transformation of Health and Care (Digicare) aims to provide the conditions necessary for building a secure, flexible, and decentralized digital health infrastructure. Creating a European Health Research and Innovation Cloud (HRIC) within this environment should enable data sharing and analysis for health research across the EU, in compliance with data protection legislation while preserving the full trust of the participants. Such a HRIC should learn from and build on existing data infrastructures, integrate best practices, and focus on the concrete needs of the community in terms of technologies, governance, management, regulation, and ethics requirements. Here, we describe the vision and expected benefits of digital data sharing in health research activities and present a roadmap that fosters the opportunities while answering the challenges of implementing a HRIC. For this, we put forward five specific recommendations and action points to ensure that a European HRIC: i) is built on established standards and guidelines, providing cloud technologies through an open and decentralized infrastructure; ii) is developed and certified to the highest standards of interoperability and data security that can be trusted by all stakeholders; iii) is supported by a robust ethical and legal framework that is compliant with the EU General Data Protection Regulation (GDPR); iv) establishes a proper environment for the training of new generations of data and medical scientists; and v) stimulates research and innovation in transnational collaborations through public and private initiatives and partnerships funded by the EU through Horizon 2020 and Horizon Europe.
Recolector de Cienci... arrow_drop_down Recolector de Ciencia Abierta, RECOLECTA; Diposit Digital de la Universitat de BarcelonaArticle . 2020 . 2023License: CC BYFull-Text: https://doi.org/10.1186/s13073-020-0713-zEurope PubMed CentralArticle . 2020Full-Text: http://europepmc.org/articles/PMC7029532Data sources: PubMed CentralZENODO; UPF Digital Repository; Permanent Hosting, Archiving and Indexing of Digital Resources and Assets; Genome Medicine; Norwegian Open Research ArchivesOther literature type . Article . 2020 . Peer-reviewedLicense: CC BYGhent University Academic BibliographyArticle . 2020Data sources: Ghent University Academic BibliographyInstitutional Repository Universiteit AntwerpenArticle . 2020Data sources: Institutional Repository Universiteit AntwerpenServeur académique lausannoisArticle . 2020License: CC BYData sources: Serveur académique lausannoisOnline Research Database In TechnologyArticle . 2020Data sources: Online Research Database In Technologyadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1186/s13073-020-0713-z&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 35 citations 35 popularity Top 10% influence Top 10% impulse Top 10% Powered by BIP!visibility 91visibility views 91 download downloads 35 Powered bymore_vert Recolector de Cienci... arrow_drop_down Recolector de Ciencia Abierta, RECOLECTA; Diposit Digital de la Universitat de BarcelonaArticle . 2020 . 2023License: CC BYFull-Text: https://doi.org/10.1186/s13073-020-0713-zEurope PubMed CentralArticle . 2020Full-Text: http://europepmc.org/articles/PMC7029532Data sources: PubMed CentralZENODO; UPF Digital Repository; Permanent Hosting, Archiving and Indexing of Digital Resources and Assets; Genome Medicine; Norwegian Open Research ArchivesOther literature type . Article . 2020 . Peer-reviewedLicense: CC BYGhent University Academic BibliographyArticle . 2020Data sources: Ghent University Academic BibliographyInstitutional Repository Universiteit AntwerpenArticle . 2020Data sources: Institutional Repository Universiteit AntwerpenServeur académique lausannoisArticle . 2020License: CC BYData sources: Serveur académique lausannoisOnline Research Database In TechnologyArticle . 2020Data sources: Online Research Database In Technologyadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1186/s13073-020-0713-z&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2019 FrancePublisher:Frontiers Media SA Funded by:EC | XF-ACTORSEC| XF-ACTORSEnora Dupas; Enora Dupas; Martial Briand; Marie-Agnès Jacques; Sophie Cesbron;International audience; Xylella fastidiosa (Xf) is an insect-borne bacterium confined to the xylem vessels of plants. This plant pathogen has a broad host range estimated to 560 plant species. Five subspecies of the pathogen with different but overlapping host ranges have been described, but only three subspecies are widely accepted, namely subspecies fastidiosa, multiplex, and pauca. Initially limited to the Americas, Xf has been detected in Europe since 2013. As management of X. fastidiosa outbreaks in Europe depends on the identification of the subspecies, accurate determination of the subspecies in infected plants as early as possible is of major interest. Thus, we developed various tetraplex and triplex quantitative PCR (qPCR) assays for X. fastidiosa detection and subspecies identification in planta in a single reaction. We designed primers and probes using SkIf, a bioinformatics tool based on k-mers, to detect specific signatures of the species and subspecies from a data set of 58 genome sequences representative of X. fastidiosa diversity. We tested the qPCR assays on 39 target and 30 non-target strains, as well as on 13 different plant species spiked with strains of the different subspecies of X. fastidiosa, and on samples from various environmental and inoculated host plants. Sensitivity of simplex assays was equal or slightly better than the reference protocol on purified DNA. Tetraplex qPCR assays had the same sensitivity than the reference protocol and allowed X. fastidiosa detection in all spiked matrices up to 10(3) cells.ml(-1). Moreover, mix infections of two to three subspecies could be detected in the same sample with tetraplex assays. In environmental plant samples, the tetraplex qPCR assays allowed subspecies identification when the current method based on multilocus sequence typing failed. The qPCR assays described here are robust and modular tools that are efficient for differentiating X. fastidiosa subspecies directly in plant samples
Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2019Full-Text: http://europepmc.org/articles/PMC6951419Data sources: PubMed CentralMémoires en Sciences de l'Information et de la Communication; Hal-DiderotArticle . 2019License: CC BYFull-Text: https://hal.inrae.fr/hal-02624817/documentadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fpls.2019.01732&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess Routesgold 25 citations 25 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2019Full-Text: http://europepmc.org/articles/PMC6951419Data sources: PubMed CentralMémoires en Sciences de l'Information et de la Communication; Hal-DiderotArticle . 2019License: CC BYFull-Text: https://hal.inrae.fr/hal-02624817/documentadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.3389/fpls.2019.01732&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu