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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Bocher; Bernard; Le Saux Wiederhold; Leconte; +3 Authors

    GeoClimate is an opensource geospatial toolbox to compute a set of climate related parameters describing a territory (morphological indicators such as Sky View Factor, urban classifications such as Local Climate Zones, etc.). GeoClimate uses vector-based inputs. It contains modules have been developed to automatically use OpenStreetMap and the French BD Topo 2x an 3x versions databases. GeoClimate is developed in Groovy language. This version can be freely used either for research and education, as well as by experts in a professional use. GeoClimate is distributed under LGPL 3 license by the DECIDE GIS team of the Lab-STICC (CNRS). The GeoClimate library has been also developed within research projects, see https://github.com/orbisgis/geoclimate/wiki#fundings Code source and documentation are available at https://github.com/orbisgis/geoclimate/releases/tag/0.0.1

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO
    Software . 2024
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    ZENODO
    Software . 2024
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Software . 2024
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      ZENODO
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Fernandes-Salvador, Jose Antonio; Cheung, William W. L.;

    The multi-species ecosystem model SS-DBEM integrates a species based model (DBEM) with the spectrum approach (SS). This model includes a large number of mechanisms and ecological processes such as population growth, movement, and dispersal of adults and larvae, as well as the ecophysiological effects of temperature, oxygen, and pH on body size, growth, mortality, and reproduction. The SS-DBEM model provides spatially (at a 0.5x0.5º resolution) and temporally (yearly) resolved predictions of changes in species’ size, abundance and biomass with consideration of competition. The competition algorithm describes the resource allocation between different species co-occurring in a spatial unit (thereafter cell) by comparing the flux of energy (in biomass) that can be supported (estimated with the SS model) with the energy demanded by the species predicted to inhabit that cell (estimated with the DBEM model). In addition, the environmental conditions are considered in the mechanisms and since there are different environmental conditions that are provided by the biogeochemical models, species responses are also different spatially. See readme.txt for scientific publications developing and using the model.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Software . 2023
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Software . 2023
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: González Flo, Eva; Ortiz Ruiz, Antonio; Arias, Carlos Alberto; Díez Montero, Rubén; +1 Authors

    The management and disposal of wastewater treatment sludge can be a costly and resource-intensive process. To provide a cost-effective and sustainable alternative, Sludge Treatment Wetlands (STW) have emerged as a viable solution for enhancing sludge quality through dewatering and biodegradation. In this study, the effectiveness of a full-scale STW for stabilizing and dewatering digested microalgal biomass from a domestic and agricultural wastewater treatment system was evaluated. The properties of the treated digestate in the STW were assessed after 35 weeks of operation and a resting period of 4 weeks. The dry matter content was found to be 12.8%, and the average macronutrient content was K: 3.8 mg/g DW, P: 4.9 mg/g DW, and Ca: 95 mg/g DW. The highest contents of micronutrients were for Fe: 7.8 mg/g DW and Mg: 7.6 mg/g DW, while heavy metals and pathogen contents were below the EC limits for sewage sludge reuse in agriculture. The STW was found to be a cost-effective and environmentally friendly option for treating mixed wastewater-based sludge for land application. The STW outperformed reference systems using centrifuge dewatering techniques, particularly in terms of eutrophication potential and acidification potential. However, the STW’s economic performance was slightly worse than that of the dewatering system in terms of unit production cost. This study is the first in the literature to investigate the use of STW for treating digested microalgae and its possible reuse in arable land, suggesting that STW infrastructures have great potential for the development of sustainable and eco-friendly sludge treatment technologies. By Eva Gonzalez-Flo 1 , Antonio Ortiz 2, Carlos A. Arias 3, Rubén Díez-Montero 2,4, Norbert Kohlheb 5, Ulf-Henning Schauser 6, Joan García 2 and Peder K. S. Gregersen 7. 1 GEMMA-Group of Environmental Engineering and Microbiology, Department of Civil and Environmental Engineering, Escola d’Enginyeria de Barcelona Est (EEBE), Universitat Politècnica de Catalunya-BarcelonaTech, Av. Eduard Maristany 16, Building C5.1, E-08019 Barcelona, Spain 2 GEMMA-Group of Environmental Engineering and Microbiology, Department of Civil and Environmental Engineering, Universitat Politècnica de Catalunya-BarcelonaTech, c/Jordi Girona 1-3, Building D1, E-08034 Barcelona, Spain 3 Department of Biology, Aarhus University, 8000 Aarhus, Denmark 4 GIA-Group of Environmental Engineering, Department of Water and Environmental Sciences and Technologies, Universidad de Cantabria, Avda. Los Castros s/n, 39005 Santander, Spain 5 Helmholtz-Zentrum Fuer Umveltforschung GMBH–UFZ (“UFZ”), 04318 Leipzig, Germany 6 N.A.T., Ingenieurökologisches Planungsbüro, 24340 Eckernförde, Germany 7 Center for Recirkulering v/Peder S, 6870 Gregersen Ölgod, Denmark This research was funded by the European Commission (H2020 project INCOVER, GA 689242). E. Gonzalez-Flo would like to thank the European Union-Next Generation EU, Ministry of Universities and Recovery, Transformation and Resilience Plan for her research grant [2021UPF-MS12]. A. Ortiz would like to thank the European Union Next-Generation EU, Ministry of Universities and Recovery, Transformation and Resilience Plan for his research grant [2022UPC-MSC-94120]. Peer Reviewed

    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Recolector de Cienci...arrow_drop_down
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Recolector de Cienci...arrow_drop_down
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Pallacks, Sven; Ziveri, Patrizia; Schiebel, Ralf; Vonhof, Hubert B; +6 Authors

    Three high resolution multicore records have been collected at three sites in the western Mediterranean with a MC400-Multicorer system during the MedSeA cruise (Mediterranean Sea Acidification in a changing climate) on 2 May to 2 June 2013 onboard the R/V Angeles Álvarino. Core MedSeA-S3-c1 was retrieved in the Alboran basin (Lat. 36.0746° N, Long. 04.11040° W) at a water depth of 1137 m, with a core length of 33 cm. Core MedSeA-S23-c1 was recovered at a water depth of 1156 m in the Balearic basin offshore Barcelona (Lat. 41.1121° N, Long. 2.38200° E) with a core length of 43 cm. MedSeA-S7-c2 was collected at the Strait of Sicily (Lat. 37.7080° N, Long. 12.40553° E) at a water depth of 263 m, with a core length of 46.5 cm. All three cores have been analyzed for changes in size normalized weight (SNW) and stable carbon isotopes (δ13C), measured in planktic foraminiferal clacite shells of the two species Globigerina bulloides and Globigerinoides elongatus. Boron (δ11B) isotopes have been measured in tests of Globigerinoides elongatus at the Alboran site, and in Globigerinoides ruber albus at the Strait of Sicily. Complementary data for the Strait of Sicily record has been obtained, including a 210Pb based age depth model, sea surface temperatures (SST), alkenone concentrations and planktic foraminiferal assemblage changes. The Strait of Sicily record (MedSeA-S7-c2) covers around the last 200 a, describing environmental changes throughout the Industrial Era (IE) at high temporal resolution. The Alboran (MedSeA-S3-c1) and Balearic Sea (MedSeA-S23-c1) records spanning the last about 1 ka at lower temporal resolution, displaying oceanographic changes throughout the transition from the pre-industrial era to present, as discussed in (Pallacks et al., 2021; doi:10.1016/j.gloplacha.2021.103549). Data has been collected to investigate the response of marine calcifiers to the combined effects of climate change stressors on decadal to centennial timescales, caused by anthropogenic CO2 emissions.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ PANGAEA - Data Publi...arrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ PANGAEA - Data Publi...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: Cammareri, M; Peparaio, M; Sinesio, Fiorella; Pons, Clara; +6 Authors

    European long shelf-life (LSL) tomato landraces can be classified into two main groups: the Italian group, including ‘Piennolo’ landraces, and the Spanish group, including the ‘Penjar’ and ‘Ramellet’ landraces. In this study, a partially common set of ‘Piennolo’ and ‘Penjar-Ramellet’ varieties was grown in Italy and Spain to evaluate the effect of different agro-environmental and storage conditions on fruit quality and shelf-life. Overall, both Italian and Spanish LSL genotypes lost their peculiar phenotype in terms of physicochemical properties and shelf-life behavior when not grown in their original agro-environment. To better understand the sensory attributes that drive consumers’ preferences, all varieties were characterized using descriptive sensory analysis combined with hedonic tests. The evaluations were conducted postharvest on raw and processed products according to the country’s culinary tradition (baked in Italy; spread on bread in Spain). Sensory description by trained panels conducted on raw and processed products highlighted different sensory profiles between the two LSL tomato groups. In the ‘Piennolo’ group, a reduction in sensory diversity among the genotypes was observed in the baked products compared to the raw ones, while this trend was not observed for the ‘Penjar-Ramellet’ group. None of the varieties fully met the consumers’ preferences.

    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Recolector de Cienci...arrow_drop_down
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Recolector de Cienci...arrow_drop_down
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Marianna, Braza; Jean-François, Rouchon; George, Tzabiras; Auteri, Franco; +1 Authors
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ RE.PUBLIC@POLIMI Res...arrow_drop_down
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ RE.PUBLIC@POLIMI Res...arrow_drop_down
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    Authors: Pons, Clara; Casals Missio, Joan; Brower, Matthijs; Sacco, Adriana; +14 Authors

    European traditional tomato varieties have been selected by farmers given their consistent performance and adaptation to local growing conditions. Here we developed a multipurpose core collection, comprising 226 accessions representative of the genotypic, phenotypic, and geographical diversity present in European traditional tomatoes, to investigate the basis of their phenotypic variation, gene×environment interactions, and stability for 33 agro-morphological traits. Comparison of the traditional varieties with a modern reference panel revealed that some traditional varieties displayed excellent agronomic performance and high trait stability, as good as or better than that of their modern counterparts. We conducted genome-wide association and genome-wide environment interaction studies and detected 141 quantitative trait loci (QTLs). Out of those, 47 QTLs were associated with the phenotype mean (meanQTLs), 41 with stability (stbQTLs), and 53 QTL-by-environment interactions (QTIs). Most QTLs displayed additive gene actions, with the exception of stbQTLs, which were mostly recessive and overdominant QTLs. Both common and specific loci controlled the phenotype mean and stability variation in traditional tomato; however, a larger proportion of specific QTLs was observed, indicating that the stability gene regulatory model is the predominant one. Developmental genes tended to map close to meanQTLs, while genes involved in stress response, hormone metabolism, and signalling were found within regions affecting stability. A total of 137 marker–trait associations for phenotypic means and stability were novel, and therefore our study enhances the understanding of the genetic basis of valuable agronomic traits and opens up a new avenue for an exploitation of the allelic diversity available within European traditional tomato germplasm This work was supported by European Commission H2020 research and innovation program through TRADITOM grant agreement no. 634561, G2P-SOL, grant agreement no. 677379, and HARNESSTOM grant agreement no. 101000716. Networking activities were funded by COST Actions “EUROCAROTEN CA15136 and ‘RoxyCOST’ CA18210 ‘RoxyCOST

    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Recolector de Cienci...arrow_drop_down
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Recolector de Cienci...arrow_drop_down
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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    Authors: George Koumoundouros;

    This scoring sheet was developed to collect data on the larval rearing methodology which is followed by commercial finfish hatcheries. It was used by Kourkouta et al. [Sci Rep. 2022 Oct 25;12(1):17896. doi: 10.1038/s41598-022-23008-z] to examine the link between the variability in the rearing conditions, and the variability in skeletal abnormalities incidence.

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    Authors: Faggion, Sara; Carnier, Paolo; Bonfatti, Valentina; Bargelloni, Luca;

    Gilthead sea bream (Sparus aurata) has been reported to be susceptible to a reassortant betanodavirus strain (RGNNV/SJNNV), posing a new threat for sea bream industry (Volpe et al. 2020) and raising the attention to selective breeding as a plausible disease prevention action. Genomic selection might be beneficial for traits, such as disease resistance, characterized by difficult, expensive and time-consuming routine individual phenotyping. Genomic models are trained firstly using a reference population of full- and half-sibs of the future breeding candidates, but, in a long-term view, the prediction of the genetic merit of future breeding candidates should be satisfactory even when the reference population consists of distant relatives of the animals to be predicted. In this sense, the genomic predictive accuracy provided by random k-fold cross-validations might be unrealistic. In this study, we assessed the accuracy of a genomic prediction model for VNN symptomatology pseudo-phenotypes (estimated breeding values, EBV) in gilthead sea bream in three different validation settings: 1) a random cross-validation; 2) a cross-validation based on genomic clustering; 3) a leave-one-family-out (LOFO) validation focused on the parents of the fish subjected to the VNN challenge test.

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    Authors: Ciulli, Sara; Errani, Francesca; Riera-Ferrer, Enrique; Caffara, Monica; +4 Authors

    Viral nervous necrosis (VNN) otherwise known as viral encephalopathy and retinopathy (VER), is the most threatening infectious disease in Mediterranean aquaculture. VNN is caused by the nervous necrosis virus (NNV) a bisegmented ssRNA+ virus included in the genus Betanodavirus, family Nodaviridae. NNV genome consists of two molecules named RNA1 and RNA2, which encodes for the RNA-dependent RNA polymerase and the coat protein, respectively. Four genotypes of NNV have been so far described: RGNNV, SJNNV, BFNNV, TPNNV (Sahul Hameed et al., 2019). Furthermore, reassortant strains have emerged from the reassortment between the RGNNV and the SJNNV genotypes and named RGNNV/SJNNV and SJNNV/RGNNV according to the RNA1 and RNA2 origin. Currently, several NNV strains are co-circulating in the Mediterranean Basin with a high prevalence of the RGNNV genotype and the RGNNV/SJNNV reassortant strain and a more limited diffusion of the SJNNV genotype and the SJNNV/RGNNV reassortant (Bandin and Souto, 2020; Volpe et al., 2020). So far, identification of NNV genotype and reassortant strains is based on amplification, sequencing and phylogenetic analysis of both viral genome RNA molecules requiring time and expertise. As viral identification is an essential information for the management of the disease in the field (Toffan et al., 2021), the development of an easy and affordable method to genotype betanodaviruses was developed in the framework of the H2020 Peformfish Project, an industry-driven project targeting industry defined priorities.

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Bocher; Bernard; Le Saux Wiederhold; Leconte; +3 Authors

    GeoClimate is an opensource geospatial toolbox to compute a set of climate related parameters describing a territory (morphological indicators such as Sky View Factor, urban classifications such as Local Climate Zones, etc.). GeoClimate uses vector-based inputs. It contains modules have been developed to automatically use OpenStreetMap and the French BD Topo 2x an 3x versions databases. GeoClimate is developed in Groovy language. This version can be freely used either for research and education, as well as by experts in a professional use. GeoClimate is distributed under LGPL 3 license by the DECIDE GIS team of the Lab-STICC (CNRS). The GeoClimate library has been also developed within research projects, see https://github.com/orbisgis/geoclimate/wiki#fundings Code source and documentation are available at https://github.com/orbisgis/geoclimate/releases/tag/0.0.1

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    Authors: Fernandes-Salvador, Jose Antonio; Cheung, William W. L.;

    The multi-species ecosystem model SS-DBEM integrates a species based model (DBEM) with the spectrum approach (SS). This model includes a large number of mechanisms and ecological processes such as population growth, movement, and dispersal of adults and larvae, as well as the ecophysiological effects of temperature, oxygen, and pH on body size, growth, mortality, and reproduction. The SS-DBEM model provides spatially (at a 0.5x0.5º resolution) and temporally (yearly) resolved predictions of changes in species’ size, abundance and biomass with consideration of competition. The competition algorithm describes the resource allocation between different species co-occurring in a spatial unit (thereafter cell) by comparing the flux of energy (in biomass) that can be supported (estimated with the SS model) with the energy demanded by the species predicted to inhabit that cell (estimated with the DBEM model). In addition, the environmental conditions are considered in the mechanisms and since there are different environmental conditions that are provided by the biogeochemical models, species responses are also different spatially. See readme.txt for scientific publications developing and using the model.

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    Authors: González Flo, Eva; Ortiz Ruiz, Antonio; Arias, Carlos Alberto; Díez Montero, Rubén; +1 Authors

    The management and disposal of wastewater treatment sludge can be a costly and resource-intensive process. To provide a cost-effective and sustainable alternative, Sludge Treatment Wetlands (STW) have emerged as a viable solution for enhancing sludge quality through dewatering and biodegradation. In this study, the effectiveness of a full-scale STW for stabilizing and dewatering digested microalgal biomass from a domestic and agricultural wastewater treatment system was evaluated. The properties of the treated digestate in the STW were assessed after 35 weeks of operation and a resting period of 4 weeks. The dry matter content was found to be 12.8%, and the average macronutrient content was K: 3.8 mg/g DW, P: 4.9 mg/g DW, and Ca: 95 mg/g DW. The highest contents of micronutrients were for Fe: 7.8 mg/g DW and Mg: 7.6 mg/g DW, while heavy metals and pathogen contents were below the EC limits for sewage sludge reuse in agriculture. The STW was found to be a cost-effective and environmentally friendly option for treating mixed wastewater-based sludge for land application. The STW outperformed reference systems using centrifuge dewatering techniques, particularly in terms of eutrophication potential and acidification potential. However, the STW’s economic performance was slightly worse than that of the dewatering system in terms of unit production cost. This study is the first in the literature to investigate the use of STW for treating digested microalgae and its possible reuse in arable land, suggesting that STW infrastructures have great potential for the development of sustainable and eco-friendly sludge treatment technologies. By Eva Gonzalez-Flo 1 , Antonio Ortiz 2, Carlos A. Arias 3, Rubén Díez-Montero 2,4, Norbert Kohlheb 5, Ulf-Henning Schauser 6, Joan García 2 and Peder K. S. Gregersen 7. 1 GEMMA-Group of Environmental Engineering and Microbiology, Department of Civil and Environmental Engineering, Escola d’Enginyeria de Barcelona Est (EEBE), Universitat Politècnica de Catalunya-BarcelonaTech, Av. Eduard Maristany 16, Building C5.1, E-08019 Barcelona, Spain 2 GEMMA-Group of Environmental Engineering and Microbiology, Department of Civil and Environmental Engineering, Universitat Politècnica de Catalunya-BarcelonaTech, c/Jordi Girona 1-3, Building D1, E-08034 Barcelona, Spain 3 Department of Biology, Aarhus University, 8000 Aarhus, Denmark 4 GIA-Group of Environmental Engineering, Department of Water and Environmental Sciences and Technologies, Universidad de Cantabria, Avda. Los Castros s/n, 39005 Santander, Spain 5 Helmholtz-Zentrum Fuer Umveltforschung GMBH–UFZ (“UFZ”), 04318 Leipzig, Germany 6 N.A.T., Ingenieurökologisches Planungsbüro, 24340 Eckernförde, Germany 7 Center for Recirkulering v/Peder S, 6870 Gregersen Ölgod, Denmark This research was funded by the European Commission (H2020 project INCOVER, GA 689242). E. Gonzalez-Flo would like to thank the European Union-Next Generation EU, Ministry of Universities and Recovery, Transformation and Resilience Plan for her research grant [2021UPF-MS12]. A. Ortiz would like to thank the European Union Next-Generation EU, Ministry of Universities and Recovery, Transformation and Resilience Plan for his research grant [2022UPC-MSC-94120]. Peer Reviewed

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    Authors: Pallacks, Sven; Ziveri, Patrizia; Schiebel, Ralf; Vonhof, Hubert B; +6 Authors

    Three high resolution multicore records have been collected at three sites in the western Mediterranean with a MC400-Multicorer system during the MedSeA cruise (Mediterranean Sea Acidification in a changing climate) on 2 May to 2 June 2013 onboard the R/V Angeles Álvarino. Core MedSeA-S3-c1 was retrieved in the Alboran basin (Lat. 36.0746° N, Long. 04.11040° W) at a water depth of 1137 m, with a core length of 33 cm. Core MedSeA-S23-c1 was recovered at a water depth of 1156 m in the Balearic basin offshore Barcelona (Lat. 41.1121° N, Long. 2.38200° E) with a core length of 43 cm. MedSeA-S7-c2 was collected at the Strait of Sicily (Lat. 37.7080° N, Long. 12.40553° E) at a water depth of 263 m, with a core length of 46.5 cm. All three cores have been analyzed for changes in size normalized weight (SNW) and stable carbon isotopes (δ13C), measured in planktic foraminiferal clacite shells of the two species Globigerina bulloides and Globigerinoides elongatus. Boron (δ11B) isotopes have been measured in tests of Globigerinoides elongatus at the Alboran site, and in Globigerinoides ruber albus at the Strait of Sicily. Complementary data for the Strait of Sicily record has been obtained, including a 210Pb based age depth model, sea surface temperatures (SST), alkenone concentrations and planktic foraminiferal assemblage changes. The Strait of Sicily record (MedSeA-S7-c2) covers around the last 200 a, describing environmental changes throughout the Industrial Era (IE) at high temporal resolution. The Alboran (MedSeA-S3-c1) and Balearic Sea (MedSeA-S23-c1) records spanning the last about 1 ka at lower temporal resolution, displaying oceanographic changes throughout the transition from the pre-industrial era to present, as discussed in (Pallacks et al., 2021; doi:10.1016/j.gloplacha.2021.103549). Data has been collected to investigate the response of marine calcifiers to the combined effects of climate change stressors on decadal to centennial timescales, caused by anthropogenic CO2 emissions.

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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: Cammareri, M; Peparaio, M; Sinesio, Fiorella; Pons, Clara; +6 Authors

    European long shelf-life (LSL) tomato landraces can be classified into two main groups: the Italian group, including ‘Piennolo’ landraces, and the Spanish group, including the ‘Penjar’ and ‘Ramellet’ landraces. In this study, a partially common set of ‘Piennolo’ and ‘Penjar-Ramellet’ varieties was grown in Italy and Spain to evaluate the effect of different agro-environmental and storage conditions on fruit quality and shelf-life. Overall, both Italian and Spanish LSL genotypes lost their peculiar phenotype in terms of physicochemical properties and shelf-life behavior when not grown in their original agro-environment. To better understand the sensory attributes that drive consumers’ preferences, all varieties were characterized using descriptive sensory analysis combined with hedonic tests. The evaluations were conducted postharvest on raw and processed products according to the country’s culinary tradition (baked in Italy; spread on bread in Spain). Sensory description by trained panels conducted on raw and processed products highlighted different sensory profiles between the two LSL tomato groups. In the ‘Piennolo’ group, a reduction in sensory diversity among the genotypes was observed in the baked products compared to the raw ones, while this trend was not observed for the ‘Penjar-Ramellet’ group. None of the varieties fully met the consumers’ preferences.

    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Recolector de Cienci...arrow_drop_down
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Recolector de Cienci...arrow_drop_down
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      This Research product is the result of merged Research products in OpenAIRE.

      You have already added works in your ORCID record related to the merged Research product.
  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Marianna, Braza; Jean-François, Rouchon; George, Tzabiras; Auteri, Franco; +1 Authors
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ RE.PUBLIC@POLIMI Res...arrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/