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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Francesco Loreggian; Laura Secco; Davide Pettenella;

    The changes and challenges that are tackling the forest sector in recent decades have prompted governments and foresters to work hard to find innovative solutions. Research in the forestry domain has focused on product and process innovation, and more recently on business systems and social innovation. In addition, organizational innovation is recognized and documented. However, while consistent conceptualization work has been conducted for business models and social innovation, the organizational domain in forestry seems less clear, characterized by multiple actors and often overlapping in literature, while a clear framework to describe it is missing. This work proposes a conceptualization of the “organizational model”, a concept embracing different approaches to build an analytical framework used to describe and characterize organizations in the forestry sector. The framework is drafted referring to existing theories, then tested (and further developed) through a semi-systematic literature review on organizations operating in forest management in Europe that are identified, categorized, and characterized. This exercise confirms that forest management organizations can be described with several diverse arrangements and can be complex entities: a holistic and comprehensive approach is more likely to be used by policy initiatives addressing improvement of forest management.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Forestsarrow_drop_down
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    Forests
    Other literature type . Article . 2023 . Peer-reviewed
    License: CC BY
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Forests
    Article . 2023
    Data sources: DOAJ
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Forestsarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Forests
      Other literature type . Article . 2023 . Peer-reviewed
      License: CC BY
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Forests
      Article . 2023
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Faggion S.; Carnier P.; Franch R.; Babbucci M.; +6 Authors

    AbstractBackgroundThe gilthead sea bream (Sparus aurata) has long been considered resistant to viral nervous necrosis (VNN), until recently, when significant mortalities caused by a reassortant nervous necrosis virus (NNV) strain were reported. Selective breeding to enhance resistance against NNV might be a preventive action. In this study, 972 sea bream larvae were subjected to a NNV challenge test and the symptomatology was recorded. All the experimental fish and their parents were genotyped using a genome-wide single nucleotide polymorphism (SNP) array consisting of over 26,000 markers.ResultsEstimates of pedigree-based and genomic heritabilities of VNN symptomatology were consistent with each other (0.21, highest posterior density interval at 95% (HPD95%): 0.1–0.4; 0.19, HPD95%: 0.1–0.3, respectively). The genome-wide association study suggested one genomic region, i.e., in linkage group (LG) 23 that might be involved in sea bream VNN resistance, although it was far from the genome-wide significance threshold. The accuracies (r) of the predicted estimated breeding values (EBV) provided by three Bayesian genomic regression models (Bayes B, Bayes C, and Ridge Regression) were consistent and on average were equal to 0.90 when assessed in a set of cross-validation (CV) procedures. When genomic relationships between training and testing sets were minimized, accuracy decreased greatly (r = 0.53 for a validation based on genomic clustering,r = 0.12 for a validation based on a leave-one-family-out approach focused on the parents of the challenged fish). Classification of the phenotype using the genomic predictions of the phenotype or using the genomic predictions of the pedigree-based, all data included, EBV as classifiers was moderately accurate (area under the ROC curve 0.60 and 0.66, respectively).ConclusionsThe estimate of the heritability for VNN symptomatology indicates that it is feasible to implement selective breeding programs for increased resistance to VNN of sea bream larvae/juveniles. Exploiting genomic information offers the opportunity of developing prediction tools for VNN resistance, and genomic models can be trained on EBV using all data or phenotypes, with minimal differences in classification performance of the trait phenotype. In a long-term view, the weakening of the genomic ties between animals in the training and test sets leads to decreased genomic prediction accuracies, thus periodical update of the reference population with new data is mandatory.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Genetics Selection E...arrow_drop_down
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    Genetics Selection Evolution
    Article . 2023
    Data sources: DOAJ
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    Genetics Selection Evolution
    Article . 2023 . Peer-reviewed
    License: CC BY
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Genetics Selection E...arrow_drop_down
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      Genetics Selection Evolution
      Article . 2023
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      Genetics Selection Evolution
      Article . 2023 . Peer-reviewed
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: S. Faggion; P. Carnier; V. Bonfatti; L. Bargelloni;

    Gilthead sea bream (Sparus aurata) has been reported to be susceptible to a reassortant betanodavirus strain (RGNNV/SJNNV), posing a new threat for sea bream industry (Volpe et al. 2020) and raising the attention to selective breeding as a plausible disease prevention action. Genomic selection might be beneficial for traits, such as disease resistance, characterized by difficult, expensive and time-consuming routine individual phenotyping. Genomic models are trained firstly using a reference population of full- and half-sibs of the future breeding candidates, but, in a long-term view, the prediction of the genetic merit of future breeding candidates should be satisfactory even when the reference population consists of distant relatives of the animals to be predicted. In this sense, the genomic predictive accuracy provided by random k-fold cross-validations might be unrealistic. In this study, we assessed the accuracy of a genomic prediction model for VNN symptomatology pseudo-phenotypes (estimated breeding values, EBV) in gilthead sea bream in three different validation settings: 1) a random cross-validation; 2) a cross-validation based on genomic clustering; 3) a leave-one-family-out (LOFO) validation focused on the parents of the fish subjected to the VNN challenge test.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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    For the interpolation of graph signals with generalized shifts of a graph basis function (GBF), we introduce the concept of positive definite functions on graphs. This concept merges kernel-based interpolation with spectral theory on graphs and can be regarded as a graph analog of radial basis function interpolation in euclidean spaces or spherical basis functions. We provide several descriptions of positive definite functions on graphs, the most relevant one is a Bochner-type characterization in terms of positive Fourier coefficients. These descriptions allow us to design GBF's and to study GBF interpolation in more detail: we are able to characterize the native spaces of the interpolants, we provide explicit estimates for the interpolation error and obtain bounds for the numerical stability. As a final application, we show how GBF interpolation can be used to get quadrature formulas on graphs. Comment: 22 pages, 4 figures

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ arXiv.org e-Print Ar...arrow_drop_down
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    arXiv.org e-Print Archive
    Other literature type . Preprint . 2019
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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    https://doi.org/10.48550/arxiv...
    Article . 2019
    License: arXiv Non-Exclusive Distribution
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ arXiv.org e-Print Ar...arrow_drop_down
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      arXiv.org e-Print Archive
      Other literature type . Preprint . 2019
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      https://doi.org/10.48550/arxiv...
      Article . 2019
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    Authors: Camara F.; Cosar S.; Bellotto N.; Merat N.; +1 Authors

    Autonomous Vehicles (AVs) must interact with other road users. They must understand and adapt to complex pedestrian behaviour, especially during crossings where priority is not clearly defined. This includes feedback effects such as modelling a pedestrian’s likely behaviours resulting from changes in the AVs behaviour. For example, whether a pedestrian will yield if the AV accelerates, and vice versa. To enable such automated interactions, it is necessary for the AV to possess a statistical model of the pedestrian’s responses to its own actions. A previous work demonstrated a proof-of- concept method to fit parameters to a simplified model based on data from a highly artificial discrete laboratory task with human subjects. The method was based on LIDAR-based person tracking, game theory, and Gaussian process analysis. The present study extends this method to enable analysis of more realistic continuous human experimental data. It shows for the first time how game-theoretic predictive parameters can be fit into pedestrians natural and continuous motion during road-crossings, and how predictions can be made about their interactions with AV controllers in similar real-world settings.

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    https://doi.org/10.1201/978100...
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      https://doi.org/10.1201/978100...
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    Authors: Akinsete, E.; Vassilopoulos, A.; Secco, L.; Pisani, E.; +4 Authors

    AbstractIn this paper, we explore how social innovation can provide a range of ecosystem services to local people while supporting public policies and private sector initiatives in delivering successful and innovative food distribution channels. In the Mediterranean basin, the status of commercial fish stocks is critical. In this sense, small‐scale, low‐impact fishing is a way to sustainably utilise socially innovative practices in the use of natural assets and to provide support to rural livelihoods while having minimal impacts on the marine environment. We use an innovative evaluation method, based on the integration of qualitative information with quantitative indicators, to assess social innovation initiatives and their impacts. The use of the methodology is demonstrated on the example of the project A Box of Sea, Greece. The results obtained show that this social initiative provides a novel food consumption and distribution model aiming at making low impact fishing more economically viable, and therefore achieving a triple sustainability for the sector (environmental, social, and economic). We identify third sector social innovation schemes as key tools to develop novel distribution systems supporting local communities (providing employment, fostering new networks and collaborations across fishers), while improving governance practices of the current fishing sector by creating a fairer market that protects the marine environment. Our findings provide a foundation upon which future evaluations of similar projects can build and compare. Such comparisons are crucial in determining patterns related to the innovation transfer processes.

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    Environmental Policy and Governance
    Article . 2022 . Peer-reviewed
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    Authors: De Bernardini, Nicola; Basile, Arianna; Zampieri, Guido; Kovalovszki, Adam; +7 Authors

    Abstract Background Carbon fixation through biological methanation has emerged as a promising technology to produce renewable energy in the context of the circular economy. The anaerobic digestion microbiome is the fundamental biological system operating biogas upgrading and is paramount in power-to-gas conversion. Carbon dioxide (CO2) methanation is frequently performed by microbiota attached to solid supports generating biofilms. Despite the apparent simplicity of the microbial community involved in biogas upgrading, the dynamics behind most of the interspecies interaction remain obscure. To understand the role of the microbial species in CO2 fixation, the biofilm generated during the biogas upgrading process has been selected as a case study. The present work investigates via genome-centric metagenomics, based on a hybrid Nanopore-Illumina approach the biofilm developed on the diffusion devices of four ex situ biogas upgrading reactors. Moreover, genome-guided metabolic reconstruction and flux balance analysis were used to propose a biological role for the dominant microbes. Results The combined microbiome was composed of 59 species, with five being dominant (> 70% of total abundance); the metagenome-assembled genomes representing these species were refined to reach a high level of completeness. Genome-guided metabolic analysis appointed Firmicutes sp. GSMM966 as the main responsible for biofilm formation. Additionally, species interactions were investigated considering their co-occurrence in 134 samples, and in terms of metabolic exchanges through flux balance simulation in a simplified medium. Some of the most abundant species (e.g., Limnochordia sp. GSMM975) were widespread (~ 67% of tested experiments), while others (e.g., Methanothermobacter wolfeii GSMM957) had a scattered distribution. Genome-scale metabolic models of the microbial community were built with boundary conditions taken from the biochemical data and showed the presence of a flexible interaction network mainly based on hydrogen and carbon dioxide uptake and formate exchange. Conclusions Our work investigated the interplay between five dominant species within the biofilm and showed their importance in a large spectrum of anaerobic biogas reactor samples. Flux balance analysis provided a deeper insight into the potential syntrophic interaction between species, especially Limnochordia sp. GSMM975 and Methanothermobacter wolfeii GSMM957. Finally, it suggested species interactions to be based on formate and amino acids exchanges.

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    Microbiome
    Article . 2022 . Peer-reviewed
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    Microbiome
    Article . 2022
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      Microbiome
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      Microbiome
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    Authors: Villanueva, B; Fernandez, A; Peiro-Pastor, R; Penaloza, C; +9 Authors

    Knowledge of population structure and genetic diversity within and between wild and farmed populations of gilthead sea bream (Sparus aurata) and European seabass (Dicentrarchus labrax) is important to achieve sustainable aquaculture production of these species and to assess the risk of genetic impacts of fish escaped from farms. Previous population genetic studies on these species have been based on a limited number of genetic markers and samples. In this study, these features were assessed using samples from 24 seabream and 25 seabass populations distributed throughout the Mediterranean Sea, and 3 wild seabream Atlantic populations. Samples were genotyped with a newly developed combined species SNP array that includes ~60K SNPs. Data from sequencing pools of individual DNA from the same populations were also used. Different approaches were employed for identifying the extent of population stratification within species. The effective population size (a parameter inversely related to the rate at which genetic variability is lost) was estimated for each population based on linkage disequilibrium. Population structure results revealed a clear differentiation between wild and farmed populations in both species. Wild populations showed a low degree of differentiation, particularly in seabream. Despite this, a slight differentiation was observed between Atlantic and Mediterranean seabream populations and between western and eastern Mediterranean seabass populations. However, farmed populations were quite heterogeneous and showed a high degree of differentiation. Some farmed populations of both species showed a genetic makeup similar to that found in wild populations. In general, the effective population size was large (> 1000) for wild and small (< 100) for farmed populations of both species. About 40% of the seabream and 80% of the seabass farmed populations had estimates of effective population size smaller than 50 highlighting the need of applying measures to control the rate at which genetic variability is lost. This work was supported by the European Commission Horizon 2020 (H2020) Framework Programme through grant agreement no 727315 MedAID project (Mediterranean Aquaculture Integrated Development) and by MCIN/ AEI /10.13039/501100011033 (Project PID2020-114426GB-C2). Peer reviewed 13 Pág.

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    Aquaculture Reports
    Article . 2022
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      Aquaculture Reports
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    Authors: Rudi Hessel; Guido Wyseure; Ioanna S. Panagea; Abdallah Alaoui; +27 Authors

    Soils form the basis for agricultural production and other ecosystem services, and soil management should aim at improving their quality and resilience. Within the SoilCare project, the concept of soil-improving cropping systems (SICS) was developed as a holistic approach to facilitate the adoption of soil management that is sustainable and profitable. SICS selected with stakeholders were monitored and evaluated for environmental, sociocultural, and economic effects to determine profitability and sustainability. Monitoring results were upscaled to European level using modelling and Europe-wide data, and a mapping tool was developed to assist in selection of appropriate SICS across Europe. Furthermore, biophysical, sociocultural, economic, and policy reasons for (non)adoption were studied. Results at the plot/farm scale showed a small positive impact of SICS on environment and soil, no effect on sustainability, and small negative impacts on economic and sociocultural dimensions. Modelling showed that different SICS had different impacts across Europe—indicating the importance of understanding local dynamics in Europe-wide assessments. Work on adoption of SICS confirmed the role economic considerations play in the uptake of SICS, but also highlighted social factors such as trust. The project’s results underlined the need for policies that support and enable a transition to more sustainable agricultural practices in a coherent way. ispartof: Land vol:11 issue:6 article-number: 780 status: published

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      Lirias
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      NIBIO Brage
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    Authors: Morino C.; Coratza P.; Soldati M.;

    Landslides are important components of global geoheritage, but awareness of their significance and value in such terms seems scanty in the scientific community. Landslides are normally identified among various features of geological and geomorphological interest, and often considered a source of hazard. However, they are seldom identified as geosites and as part of geoheritage. This paper aims at filling these gaps by highlighting the importance of landslides in the global geoheritage. After a short introduction on the values and criteria to define landforms as geosites, based on literature review, we show to what extent landslides have been defined as geomorphosites and as part of geoheritage around the world. We then outline three aspects that should be specifically considered in the identification of landslides as geomorphosites, namely 1) past and present climate changes, 2) anthropic signature, and 3) risk perception. Finally, we describe four cases of spectacular landslides that serve as significant examples worldwide.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ IRIS UNIMORE - Archi...arrow_drop_down
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    Frontiers in Earth Science
    Article . 2022
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Francesco Loreggian; Laura Secco; Davide Pettenella;

    The changes and challenges that are tackling the forest sector in recent decades have prompted governments and foresters to work hard to find innovative solutions. Research in the forestry domain has focused on product and process innovation, and more recently on business systems and social innovation. In addition, organizational innovation is recognized and documented. However, while consistent conceptualization work has been conducted for business models and social innovation, the organizational domain in forestry seems less clear, characterized by multiple actors and often overlapping in literature, while a clear framework to describe it is missing. This work proposes a conceptualization of the “organizational model”, a concept embracing different approaches to build an analytical framework used to describe and characterize organizations in the forestry sector. The framework is drafted referring to existing theories, then tested (and further developed) through a semi-systematic literature review on organizations operating in forest management in Europe that are identified, categorized, and characterized. This exercise confirms that forest management organizations can be described with several diverse arrangements and can be complex entities: a holistic and comprehensive approach is more likely to be used by policy initiatives addressing improvement of forest management.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Forestsarrow_drop_down
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    Forests
    Other literature type . Article . 2023 . Peer-reviewed
    License: CC BY
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    Forests
    Article . 2023
    Data sources: DOAJ
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Forestsarrow_drop_down
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      Forests
      Other literature type . Article . 2023 . Peer-reviewed
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      Forests
      Article . 2023
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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    Authors: Faggion S.; Carnier P.; Franch R.; Babbucci M.; +6 Authors

    AbstractBackgroundThe gilthead sea bream (Sparus aurata) has long been considered resistant to viral nervous necrosis (VNN), until recently, when significant mortalities caused by a reassortant nervous necrosis virus (NNV) strain were reported. Selective breeding to enhance resistance against NNV might be a preventive action. In this study, 972 sea bream larvae were subjected to a NNV challenge test and the symptomatology was recorded. All the experimental fish and their parents were genotyped using a genome-wide single nucleotide polymorphism (SNP) array consisting of over 26,000 markers.ResultsEstimates of pedigree-based and genomic heritabilities of VNN symptomatology were consistent with each other (0.21, highest posterior density interval at 95% (HPD95%): 0.1–0.4; 0.19, HPD95%: 0.1–0.3, respectively). The genome-wide association study suggested one genomic region, i.e., in linkage group (LG) 23 that might be involved in sea bream VNN resistance, although it was far from the genome-wide significance threshold. The accuracies (r) of the predicted estimated breeding values (EBV) provided by three Bayesian genomic regression models (Bayes B, Bayes C, and Ridge Regression) were consistent and on average were equal to 0.90 when assessed in a set of cross-validation (CV) procedures. When genomic relationships between training and testing sets were minimized, accuracy decreased greatly (r = 0.53 for a validation based on genomic clustering,r = 0.12 for a validation based on a leave-one-family-out approach focused on the parents of the challenged fish). Classification of the phenotype using the genomic predictions of the phenotype or using the genomic predictions of the pedigree-based, all data included, EBV as classifiers was moderately accurate (area under the ROC curve 0.60 and 0.66, respectively).ConclusionsThe estimate of the heritability for VNN symptomatology indicates that it is feasible to implement selective breeding programs for increased resistance to VNN of sea bream larvae/juveniles. Exploiting genomic information offers the opportunity of developing prediction tools for VNN resistance, and genomic models can be trained on EBV using all data or phenotypes, with minimal differences in classification performance of the trait phenotype. In a long-term view, the weakening of the genomic ties between animals in the training and test sets leads to decreased genomic prediction accuracies, thus periodical update of the reference population with new data is mandatory.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Genetics Selection E...arrow_drop_down
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    Genetics Selection Evolution
    Article . 2023
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    Genetics Selection Evolution
    Article . 2023 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Genetics Selection E...arrow_drop_down
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      Genetics Selection Evolution
      Article . 2023
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      Genetics Selection Evolution
      Article . 2023 . Peer-reviewed
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    Authors: S. Faggion; P. Carnier; V. Bonfatti; L. Bargelloni;

    Gilthead sea bream (Sparus aurata) has been reported to be susceptible to a reassortant betanodavirus strain (RGNNV/SJNNV), posing a new threat for sea bream industry (Volpe et al. 2020) and raising the attention to selective breeding as a plausible disease prevention action. Genomic selection might be beneficial for traits, such as disease resistance, characterized by difficult, expensive and time-consuming routine individual phenotyping. Genomic models are trained firstly using a reference population of full- and half-sibs of the future breeding candidates, but, in a long-term view, the prediction of the genetic merit of future breeding candidates should be satisfactory even when the reference population consists of distant relatives of the animals to be predicted. In this sense, the genomic predictive accuracy provided by random k-fold cross-validations might be unrealistic. In this study, we assessed the accuracy of a genomic prediction model for VNN symptomatology pseudo-phenotypes (estimated breeding values, EBV) in gilthead sea bream in three different validation settings: 1) a random cross-validation; 2) a cross-validation based on genomic clustering; 3) a leave-one-family-out (LOFO) validation focused on the parents of the fish subjected to the VNN challenge test.

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    Article . 2022
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    For the interpolation of graph signals with generalized shifts of a graph basis function (GBF), we introduce the concept of positive definite functions on graphs. This concept merges kernel-based interpolation with spectral theory on graphs and can be regarded as a graph analog of radial basis function interpolation in euclidean spaces or spherical basis functions. We provide several descriptions of positive definite functions on graphs, the most relevant one is a Bochner-type characterization in terms of positive Fourier coefficients. These descriptions allow us to design GBF's and to study GBF interpolation in more detail: we are able to characterize the native spaces of the interpolants, we provide explicit estimates for the interpolation error and obtain bounds for the numerical stability. As a final application, we show how GBF interpolation can be used to get quadrature formulas on graphs. Comment: 22 pages, 4 figures

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    arXiv.org e-Print Archive
    Other literature type . Preprint . 2019
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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    https://doi.org/10.48550/arxiv...
    Article . 2019
    License: arXiv Non-Exclusive Distribution
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      arXiv.org e-Print Archive
      Other literature type . Preprint . 2019
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      https://doi.org/10.48550/arxiv...
      Article . 2019
      License: arXiv Non-Exclusive Distribution
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    Authors: Camara F.; Cosar S.; Bellotto N.; Merat N.; +1 Authors

    Autonomous Vehicles (AVs) must interact with other road users. They must understand and adapt to complex pedestrian behaviour, especially during crossings where priority is not clearly defined. This includes feedback effects such as modelling a pedestrian’s likely behaviours resulting from changes in the AVs behaviour. For example, whether a pedestrian will yield if the AV accelerates, and vice versa. To enable such automated interactions, it is necessary for the AV to possess a statistical model of the pedestrian’s responses to its own actions. A previous work demonstrated a proof-of- concept method to fit parameters to a simplified model based on data from a highly artificial discrete laboratory task with human subjects. The method was based on LIDAR-based person tracking, game theory, and Gaussian process analysis. The present study extends this method to enable analysis of more realistic continuous human experimental data. It shows for the first time how game-theoretic predictive parameters can be fit into pedestrians natural and continuous motion during road-crossings, and how predictions can be made about their interactions with AV controllers in similar real-world settings.

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    https://doi.org/10.1201/978100...
    Part of book or chapter of book . 2022 . Peer-reviewed
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      https://doi.org/10.1201/978100...
      Part of book or chapter of book . 2022 . Peer-reviewed
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: Akinsete, E.; Vassilopoulos, A.; Secco, L.; Pisani, E.; +4 Authors

    AbstractIn this paper, we explore how social innovation can provide a range of ecosystem services to local people while supporting public policies and private sector initiatives in delivering successful and innovative food distribution channels. In the Mediterranean basin, the status of commercial fish stocks is critical. In this sense, small‐scale, low‐impact fishing is a way to sustainably utilise socially innovative practices in the use of natural assets and to provide support to rural livelihoods while having minimal impacts on the marine environment. We use an innovative evaluation method, based on the integration of qualitative information with quantitative indicators, to assess social innovation initiatives and their impacts. The use of the methodology is demonstrated on the example of the project A Box of Sea, Greece. The results obtained show that this social initiative provides a novel food consumption and distribution model aiming at making low impact fishing more economically viable, and therefore achieving a triple sustainability for the sector (environmental, social, and economic). We identify third sector social innovation schemes as key tools to develop novel distribution systems supporting local communities (providing employment, fostering new networks and collaborations across fishers), while improving governance practices of the current fishing sector by creating a fairer market that protects the marine environment. Our findings provide a foundation upon which future evaluations of similar projects can build and compare. Such comparisons are crucial in determining patterns related to the innovation transfer processes.

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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Environmental Policy and Governance
    Article . 2022 . Peer-reviewed
    License: Wiley Online Library User Agreement
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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    Authors: De Bernardini, Nicola; Basile, Arianna; Zampieri, Guido; Kovalovszki, Adam; +7 Authors

    Abstract Background Carbon fixation through biological methanation has emerged as a promising technology to produce renewable energy in the context of the circular economy. The anaerobic digestion microbiome is the fundamental biological system operating biogas upgrading and is paramount in power-to-gas conversion. Carbon dioxide (CO2) methanation is frequently performed by microbiota attached to solid supports generating biofilms. Despite the apparent simplicity of the microbial community involved in biogas upgrading, the dynamics behind most of the interspecies interaction remain obscure. To understand the role of the microbial species in CO2 fixation, the biofilm generated during the biogas upgrading process has been selected as a case study. The present work investigates via genome-centric metagenomics, based on a hybrid Nanopore-Illumina approach the biofilm developed on the diffusion devices of four ex situ biogas upgrading reactors. Moreover, genome-guided metabolic reconstruction and flux balance analysis were used to propose a biological role for the dominant microbes. Results The combined microbiome was composed of 59 species, with five being dominant (> 70% of total abundance); the metagenome-assembled genomes representing these species were refined to reach a high level of completeness. Genome-guided metabolic analysis appointed Firmicutes sp. GSMM966 as the main responsible for biofilm formation. Additionally, species interactions were investigated considering their co-occurrence in 134 samples, and in terms of metabolic exchanges through flux balance simulation in a simplified medium. Some of the most abundant species (e.g., Limnochordia sp. GSMM975) were widespread (~ 67% of tested experiments), while others (e.g., Methanothermobacter wolfeii GSMM957) had a scattered distribution. Genome-scale metabolic models of the microbial community were built with boundary conditions taken from the biochemical data and showed the presence of a flexible interaction network mainly based on hydrogen and carbon dioxide uptake and formate exchange. Conclusions Our work investigated the interplay between five dominant species within the biofilm and showed their importance in a large spectrum of anaerobic biogas reactor samples. Flux balance analysis provided a deeper insight into the potential syntrophic interaction between species, especially Limnochordia sp. GSMM975 and Methanothermobacter wolfeii GSMM957. Finally, it suggested species interactions to be based on formate and amino acids exchanges.

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    Microbiome
    Article . 2022 . Peer-reviewed
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    Microbiome
    Article . 2022
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      Microbiome
      Article . 2022 . Peer-reviewed
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      Microbiome
      Article . 2022
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    Authors: Villanueva, B; Fernandez, A; Peiro-Pastor, R; Penaloza, C; +9 Authors

    Knowledge of population structure and genetic diversity within and between wild and farmed populations of gilthead sea bream (Sparus aurata) and European seabass (Dicentrarchus labrax) is important to achieve sustainable aquaculture production of these species and to assess the risk of genetic impacts of fish escaped from farms. Previous population genetic studies on these species have been based on a limited number of genetic markers and samples. In this study, these features were assessed using samples from 24 seabream and 25 seabass populations distributed throughout the Mediterranean Sea, and 3 wild seabream Atlantic populations. Samples were genotyped with a newly developed combined species SNP array that includes ~60K SNPs. Data from sequencing pools of individual DNA from the same populations were also used. Different approaches were employed for identifying the extent of population stratification within species. The effective population size (a parameter inversely related to the rate at which genetic variability is lost) was estimated for each population based on linkage disequilibrium. Population structure results revealed a clear differentiation between wild and farmed populations in both species. Wild populations showed a low degree of differentiation, particularly in seabream. Despite this, a slight differentiation was observed between Atlantic and Mediterranean seabream populations and between western and eastern Mediterranean seabass populations. However, farmed populations were quite heterogeneous and showed a high degree of differentiation. Some farmed populations of both species showed a genetic makeup similar to that found in wild populations. In general, the effective population size was large (> 1000) for wild and small (< 100) for farmed populations of both species. About 40% of the seabream and 80% of the seabass farmed populations had estimates of effective population size smaller than 50 highlighting the need of applying measures to control the rate at which genetic variability is lost. This work was supported by the European Commission Horizon 2020 (H2020) Framework Programme through grant agreement no 727315 MedAID project (Mediterranean Aquaculture Integrated Development) and by MCIN/ AEI /10.13039/501100011033 (Project PID2020-114426GB-C2). Peer reviewed 13 Pág.

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    Aquaculture Reports
    Article . 2022
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      Aquaculture Reports
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    Authors: Rudi Hessel; Guido Wyseure; Ioanna S. Panagea; Abdallah Alaoui; +27 Authors

    Soils form the basis for agricultural production and other ecosystem services, and soil management should aim at improving their quality and resilience. Within the SoilCare project, the concept of soil-improving cropping systems (SICS) was developed as a holistic approach to facilitate the adoption of soil management that is sustainable and profitable. SICS selected with stakeholders were monitored and evaluated for environmental, sociocultural, and economic effects to determine profitability and sustainability. Monitoring results were upscaled to European level using modelling and Europe-wide data, and a mapping tool was developed to assist in selection of appropriate SICS across Europe. Furthermore, biophysical, sociocultural, economic, and policy reasons for (non)adoption were studied. Results at the plot/farm scale showed a small positive impact of SICS on environment and soil, no effect on sustainability, and small negative impacts on economic and sociocultural dimensions. Modelling showed that different SICS had different impacts across Europe—indicating the importance of understanding local dynamics in Europe-wide assessments. Work on adoption of SICS confirmed the role economic considerations play in the uptake of SICS, but also highlighted social factors such as trust. The project’s results underlined the need for policies that support and enable a transition to more sustainable agricultural practices in a coherent way. ispartof: Land vol:11 issue:6 article-number: 780 status: published

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    Article . 2022
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Archivio istituziona...arrow_drop_down
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    Authors: Morino C.; Coratza P.; Soldati M.;

    Landslides are important components of global geoheritage, but awareness of their significance and value in such terms seems scanty in the scientific community. Landslides are normally identified among various features of geological and geomorphological interest, and often considered a source of hazard. However, they are seldom identified as geosites and as part of geoheritage. This paper aims at filling these gaps by highlighting the importance of landslides in the global geoheritage. After a short introduction on the values and criteria to define landforms as geosites, based on literature review, we show to what extent landslides have been defined as geomorphosites and as part of geoheritage around the world. We then outline three aspects that should be specifically considered in the identification of landslides as geomorphosites, namely 1) past and present climate changes, 2) anthropic signature, and 3) risk perception. Finally, we describe four cases of spectacular landslides that serve as significant examples worldwide.

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    Frontiers in Earth Science
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